{ "type": "genome", "identifier": "GCA_013335025.1", "organism": "Desulfobulbaceae bacterium", "title": "Desulfobulbaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Univerisity of Wisconsin--Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013335025.1", "bioproject": "PRJNA615962", "biosample": "SAMN14482968", "wgs_master": "JAAXWK000000000.1", "refseq_category": "na", "taxid": "2053307", "species_taxid": "2053307", "organism_name": "Desulfobulbaceae bacterium", "infraspecific_name": "", "isolate": "W9_Combined_metabat2_014", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/11", "asm_name": "ASM1333502v1", "submitter": "Univerisity of Wisconsin--Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/335/025/GCA_013335025.1_ASM1333502v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-11", "dateModified": "2020-06-11", "datePublished": "2020-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobulbaceae bacterium" ], "sample_taxid": [ "2053307" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wisconsin, near Picnic Point on the coast of Lake Mendota" ], "sample_host_location_id": [], "data_size": "1.156 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 89.66, "contamination": 8.33, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4055401", "Number of Sequences": "106", "Longest Sequences (bp)": "217797", "N50 (bp)": "66479", "Gap Ratio (%)": "0.000493", "GCcontent (%)": "57.1", "Number of CDSs": "3496", "Average Protein Length": "328.1", "Coding Ratio (%)": "84.9", "Number of rRNAs": "0", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_014201505.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 77.1428, "matched_fragments": 73, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfoprunum benzoelyticum", "strain": "strain=DSM 28570", "accession": "GCA_016918515.1", "taxid": 1506996, "species_taxid": 1506996, "relation_to_type": "type", "validated": true, "ani": 77.0214, "matched_fragments": 74, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfurivibrio alkaliphilus", "strain": "strain=AHT 2", "accession": "GCA_000092205.1", "taxid": 427923, "species_taxid": 427923, "relation_to_type": "type", "validated": true, "ani": 76.9681, "matched_fragments": 136, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus elongatus", "strain": "strain=DSM 2908", "accession": "GCA_000621145.1", "taxid": 53332, "species_taxid": 53332, "relation_to_type": "type", "validated": true, "ani": 76.718, "matched_fragments": 122, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfobulbus propionicus", "strain": "strain=DSM 2032", "accession": "GCA_000186885.1", "taxid": 894, "species_taxid": 894, "relation_to_type": "type", "validated": true, "ani": 76.6269, "matched_fragments": 94, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 76.1226, "matched_fragments": 73, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfogranum mediterraneum", "strain": "strain=DSM 13871", "accession": "GCA_000429965.1", "taxid": 160661, "species_taxid": 160661, "relation_to_type": "type", "validated": true, "ani": 76.0353, "matched_fragments": 82, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.7789, "matched_fragments": 52, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=SH388", "accession": "GCA_012979235.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.7346, "matched_fragments": 54, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 89.66, "contamination": 8.33, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_002841785.1", "gtdb_species": "s__UBA2262 sp002841785", "ani": 77.9284, "matched_fragments": 132, "total_fragments": 1299, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfurivibrionaceae;g__UBA2262", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.70", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_903869265.1", "gtdb_species": "s__UBA2262 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