{ "type": "genome", "identifier": "GCA_013335115.1", "organism": "Chlorobiaceae bacterium", "title": "Chlorobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Univerisity of Wisconsin--Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013335115.1", "bioproject": "PRJNA615962", "biosample": "SAMN14482974", "wgs_master": "JAAXWQ000000000.1", "refseq_category": "na", "taxid": "2067991", "species_taxid": "2067991", "organism_name": "Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "W9_Combined_metabat2_031", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/11", "asm_name": "ASM1333511v1", "submitter": "Univerisity of Wisconsin--Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/335/115/GCA_013335115.1_ASM1333511v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-11", "dateModified": "2020-06-11", "datePublished": "2020-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Chlorobiaceae bacterium" ], "sample_taxid": [ "2067991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wisconsin, near Picnic Point on the coast of Lake Mendota" ], "sample_host_location_id": [], "data_size": "0.592 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2097405", "Number of Sequences": "29", "Longest Sequences (bp)": "415665", "N50 (bp)": "154758", "Gap Ratio (%)": "0.000477", "GCcontent (%)": "59.5", "Number of CDSs": "1968", "Average Protein Length": "314.5", "Coding Ratio (%)": "88.5", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 79.9042, "matched_fragments": 333, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 79.7146, "matched_fragments": 356, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum tepidum", "strain": "strain=TLS", "accession": "GCA_000006985.1", "taxid": 1097, "species_taxid": 1097, "relation_to_type": "type", "validated": true, "ani": 78.9884, "matched_fragments": 311, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 78.0805, "matched_fragments": 189, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.153, "matched_fragments": 99, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 76.689, "matched_fragments": 56, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prosthecochloris vibrioformis", "strain": "strain=DSM 260", "accession": "GCA_006265245.1", "taxid": 1098, "species_taxid": 1098, "relation_to_type": "type", "validated": true, "ani": 76.483, "matched_fragments": 63, "total_fragments": 682, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013335115.1", "gtdb_species": "s__Chlorobaculum sp013335115", "ani": 100.0, "matched_fragments": 681, "total_fragments": 682, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903929135.1", "gtdb_species": "s__Chlorobaculum sp903929135", "ani": 81.5398, "matched_fragments": 412, "total_fragments": 682, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013334335.1", "gtdb_species": "s__Chlorobaculum sp013334335", "ani": 81.3232, "matched_fragments": 393, "total_fragments": 682, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004118635.1", "gtdb_species": "s__Chlorobaculum sp004118635", "ani": 79.3153, "matched_fragments": 337, "total_fragments": 682, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.203, "cell_length": 0.048, "doubling_h": 0.283, "growth_tmp": 27.653, "optimum_tmp": 31.393, "optimum_ph": 5.975, "genome_size": 2525906.989, "gc_content": 52.738, "coding_genes": 2296.574, "rRNA16S_genes": 1.888, "tRNA_genes": 47.944, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.3, 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