{ "type": "genome", "identifier": "GCA_013335675.1", "organism": "Chlorobiaceae bacterium", "title": "Chlorobiaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Univerisity of Wisconsin--Madison", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013335675.1", "bioproject": "PRJNA615962", "biosample": "SAMN14482934", "wgs_master": "JAAXVC000000000.1", "refseq_category": "na", "taxid": "2067991", "species_taxid": "2067991", "organism_name": "Chlorobiaceae bacterium", "infraspecific_name": "", "isolate": "W4_Combined_metabat2_109", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/11", "asm_name": "ASM1333567v1", "submitter": "Univerisity of Wisconsin--Madison", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/335/675/GCA_013335675.1_ASM1333567v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-11", "dateModified": "2020-06-11", "datePublished": "2020-06-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Chlorobiaceae bacterium" ], "sample_taxid": [ "2067991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Wisconsin, near Picnic Point on the coast of Lake Mendota" ], "sample_host_location_id": [], "data_size": "0.632 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.71, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2208503", "Number of Sequences": "371", "Longest Sequences (bp)": "34790", "N50 (bp)": "7843", "Gap Ratio (%)": "0.004528", "GCcontent (%)": "52.6", "Number of CDSs": "1692", "Average Protein Length": "300.6", "Coding Ratio (%)": "69.1", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chlorobaculum tepidum", "strain": "strain=TLS", "accession": "GCA_000006985.1", "taxid": 1097, "species_taxid": 1097, "relation_to_type": "type", "validated": true, "ani": 77.7388, "matched_fragments": 74, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon luteolum", "strain": "strain=DSM 273", "accession": "GCA_000012485.1", "taxid": 1100, "species_taxid": 1100, "relation_to_type": "type", "validated": true, "ani": 77.5457, "matched_fragments": 104, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium ferrooxidans", "strain": "strain=DSM 13031", "accession": "GCA_000168715.1", "taxid": 84205, "species_taxid": 84205, "relation_to_type": "type", "validated": true, "ani": 77.4051, "matched_fragments": 104, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum limnaeum", "strain": "strain=DSM 1677", "accession": "GCA_001747405.1", "taxid": 274537, "species_taxid": 274537, "relation_to_type": "type", "validated": true, "ani": 77.3977, "matched_fragments": 88, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobaculum thiosulfatiphilum", "strain": "strain=DSM 249", "accession": "GCA_006265165.1", "taxid": 115852, "species_taxid": 115852, "relation_to_type": "type", "validated": true, "ani": 77.3738, "matched_fragments": 88, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chlorobium limicola", "strain": "strain=DSM 245", "accession": "GCA_000020465.1", "taxid": 1092, "species_taxid": 1092, "relation_to_type": "type", "validated": true, "ani": 77.2799, "matched_fragments": 120, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelodictyon phaeoclathratiforme", "strain": "strain=BU-1", "accession": "GCA_000020645.1", "taxid": 34090, "species_taxid": 34090, "relation_to_type": "type", "validated": true, "ani": 77.2272, "matched_fragments": 73, "total_fragments": 547, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 8.71, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013335405.1", "gtdb_species": "s__Chlorobium sp013335405", "ani": 99.9109, "matched_fragments": 527, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_013334565.1", "gtdb_species": "s__Chlorobium sp013334565", "ani": 81.1477, "matched_fragments": 317, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903928225.1", "gtdb_species": "s__Chlorobium sp903928225", "ani": 80.9636, "matched_fragments": 339, "total_fragments": 547, "gtdb_taxonomy": 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"d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013334755.1", "gtdb_species": "s__Chlorobium sp013334755", "ani": 77.1482, "matched_fragments": 91, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Chlorobia;o__Chlorobiales;f__Chlorobiaceae;g__Chlorobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.60", "min_intra_species_ani": "99.60", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.203, "cell_length": 0.048, "doubling_h": 0.283, "growth_tmp": 27.653, "optimum_tmp": 31.393, "optimum_ph": 5.975, "genome_size": 2525906.989, "gc_content": 52.738, 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"MEO_0000116", "label": "biofilm" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }