{
    "type": "genome",
    "identifier": "GCA_013336125.1",
    "organism": "Methanoregulaceae archaeon",
    "title": "Methanoregulaceae archaeon",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Univerisity of Wisconsin--Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013336125.1",
        "bioproject": "PRJNA615962",
        "biosample": "SAMN14482912",
        "wgs_master": "JAAXUG000000000.1",
        "refseq_category": "na",
        "taxid": "2485498",
        "species_taxid": "2485498",
        "organism_name": "Methanoregulaceae archaeon",
        "infraspecific_name": "",
        "isolate": "W4_Combined_metabat2_017",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/11",
        "asm_name": "ASM1333612v1",
        "submitter": "Univerisity of Wisconsin--Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/336/125/GCA_013336125.1_ASM1333612v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-11",
    "dateModified": "2020-06-11",
    "datePublished": "2020-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanoregulaceae archaeon"
        ],
        "sample_taxid": [
            "2485498"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Wisconsin, near Picnic Point on the coast of Lake Mendota"
        ],
        "sample_host_location_id": [],
        "data_size": "0.281 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 69.61,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "969729",
        "Number of Sequences": "328",
        "Longest Sequences (bp)": "9157",
        "N50 (bp)": "3191",
        "Gap Ratio (%)": "0.006187",
        "GCcontent (%)": "55.2",
        "Number of CDSs": "769",
        "Average Protein Length": "236.9",
        "Coding Ratio (%)": "56.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 69.61,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002499905.1",
                "gtdb_species": "s__UBA9949 sp002499905",
                "ani": 79.2517,
                "matched_fragments": 83,
                "total_fragments": 137,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA9949",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.348,
        "cell_length": 0.099,
        "doubling_h": 1.593,
        "growth_tmp": 35.75,
        "optimum_tmp": 38.333,
        "optimum_ph": 6.15,
        "genome_size": 2506240.0,
        "gc_content": 54.95,
        "coding_genes": 2580.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 51.5,
        "gram_stain": 0.333,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.75,
        "coccus_cell_shape": 0.25,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanospirillaceae",
        "g__UBA9949",
        "s__"
    ],
    "_genome_taxon": [
        "Methanoregulaceae",
        "archaeon",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanomicrobia",
        "o__Methanomicrobiales",
        "f__Methanospirillaceae",
        "g__UBA9949",
        "s__",
        "Archaea",
        "Halobacteriota",
        "Methanomicrobia",
        "Methanomicrobiales",
        "Methanospirillaceae",
        "UBA9949",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}