{
    "type": "genome",
    "identifier": "GCA_013336555.1",
    "organism": "Oscillochloris sp.",
    "title": "Oscillochloris sp.",
    "description": "derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Univerisity of Wisconsin--Madison",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013336555.1",
        "bioproject": "PRJNA615962",
        "biosample": "SAMN14482891",
        "wgs_master": "JAAXTL000000000.1",
        "refseq_category": "na",
        "taxid": "2547424",
        "species_taxid": "2547424",
        "organism_name": "Oscillochloris sp.",
        "infraspecific_name": "",
        "isolate": "W4_Combined_metabat1_050",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/11",
        "asm_name": "ASM1333655v1",
        "submitter": "Univerisity of Wisconsin--Madison",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/336/555/GCA_013336555.1_ASM1333655v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-11",
    "dateModified": "2020-06-11",
    "datePublished": "2020-06-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oscillochloris sp."
        ],
        "sample_taxid": [
            "2547424"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Wisconsin, near Picnic Point on the coast of Lake Mendota"
        ],
        "sample_host_location_id": [],
        "data_size": "1.527 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 67.52,
        "contamination": 13.54,
        "strain_heterogeneity": 50.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5288349",
        "Number of Sequences": "1304",
        "Longest Sequences (bp)": "24654",
        "N50 (bp)": "4626",
        "Gap Ratio (%)": "0.004916",
        "GCcontent (%)": "57.2",
        "Number of CDSs": "3395",
        "Average Protein Length": "308.1",
        "Coding Ratio (%)": "59.3",
        "Number of rRNAs": "0",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Oscillochloris trichoides",
                "strain": "strain=DG-6",
                "accession": "GCA_000152145.1",
                "taxid": 104176,
                "species_taxid": 104176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0243,
                "matched_fragments": 157,
                "total_fragments": 1054,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chloroflexus islandicus",
                "strain": "strain=isl-2",
                "accession": "GCA_001650695.1",
                "taxid": 1707952,
                "species_taxid": 1707952,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6316,
                "matched_fragments": 54,
                "total_fragments": 1054,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 67.52,
            "contamination": 13.54,
            "strain_heterogeneity": 50.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_004138175.2",
                "gtdb_species": "s__Oscillochloris sp004138175",
                "ani": 78.2735,
                "matched_fragments": 365,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903887465.1",
                "gtdb_species": "s__Oscillochloris sp903887465",
                "ani": 77.525,
                "matched_fragments": 257,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_903877945.1",
                "gtdb_species": "s__Oscillochloris sp903877945",
                "ani": 77.3557,
                "matched_fragments": 195,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.73",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_004138135.1",
                "gtdb_species": "s__Oscillochloris fontis",
                "ani": 77.0657,
                "matched_fragments": 159,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000152145.1",
                "gtdb_species": "s__Oscillochloris trichoides",
                "ani": 77.0092,
                "matched_fragments": 158,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903920315.1",
                "gtdb_species": "s__Oscillochloris sp903920315",
                "ani": 76.9997,
                "matched_fragments": 189,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Oscillochloris",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_004367505.1",
                "gtdb_species": "s__OHK40 sp004367505",
                "ani": 76.0822,
                "matched_fragments": 116,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__OHK40",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002532535.1",
                "gtdb_species": "s__Viridilinea mediisalina",
                "ani": 75.7748,
                "matched_fragments": 55,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Viridilinea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001650695.1",
                "gtdb_species": "s__Chloroflexus islandicus",
                "ani": 75.6316,
                "matched_fragments": 54,
                "total_fragments": 1054,
                "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Chloroflexia;o__Chloroflexales;f__Chloroflexaceae;g__Chloroflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 30.75,
        "optimum_ph": null,
        "genome_size": 4343417.5,
        "gc_content": 59.261,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Chloroflexia",
        "o__Chloroflexales",
        "f__Chloroflexaceae",
        "g__Oscillochloris",
        "s__"
    ],
    "_genome_taxon": [
        "Oscillochloris",
        "sp.",
        "d__Bacteria",
        "p__Chloroflexota",
        "c__Chloroflexia",
        "o__Chloroflexales",
        "f__Chloroflexaceae",
        "g__Oscillochloris",
        "s__",
        "Bacteria",
        "Chloroflexota",
        "Chloroflexia",
        "Chloroflexales",
        "Chloroflexaceae",
        "Oscillochloris",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000116",
            "label": "biofilm"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}