{
    "type": "genome",
    "identifier": "GCA_013360385.1",
    "organism": "Armatimonadota bacterium",
    "title": "Armatimonadota bacterium",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "NanJing University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013360385.1",
        "bioproject": "PRJNA601861",
        "biosample": "SAMN14239045",
        "wgs_master": "JABWBS000000000.1",
        "refseq_category": "na",
        "taxid": "2033014",
        "species_taxid": "2033014",
        "organism_name": "Armatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "MAG_36",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/18",
        "asm_name": "ASM1336038v1",
        "submitter": "NanJing University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/360/385/GCA_013360385.1_ASM1336038v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-18",
    "dateModified": "2020-06-18",
    "datePublished": "2020-06-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Armatimonadota bacterium"
        ],
        "sample_taxid": [
            "2033014"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:NanJing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.155 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 88.87,
        "contamination": 5.09,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4153587",
        "Number of Sequences": "1135",
        "Longest Sequences (bp)": "15717",
        "N50 (bp)": "4139",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.0",
        "Number of CDSs": "2449",
        "Average Protein Length": "320.3",
        "Coding Ratio (%)": "56.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nocardioides halotolerans",
                "strain": "strain=DSM 19273",
                "accession": "GCA_000422805.1",
                "taxid": 433660,
                "species_taxid": 433660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.0053,
                "matched_fragments": 57,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Plasticicumulans lactativorans",
                "strain": "strain=DSM 25287",
                "accession": "GCA_004341245.1",
                "taxid": 1133106,
                "species_taxid": 1133106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9664,
                "matched_fragments": 57,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudoxanthomonas jiangsuensis",
                "strain": "strain=DSM 22398",
                "accession": "GCA_010093185.1",
                "taxid": 619688,
                "species_taxid": 619688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9071,
                "matched_fragments": 65,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptosporangium sandarakinum",
                "strain": "strain=DSM 45763",
                "accession": "GCA_013409935.1",
                "taxid": 1260955,
                "species_taxid": 1260955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8805,
                "matched_fragments": 80,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptosporangium pseudovulgare",
                "strain": "strain=JCM 3115",
                "accession": "GCA_014648055.1",
                "taxid": 35765,
                "species_taxid": 35765,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8167,
                "matched_fragments": 82,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium isbiliense",
                "strain": "strain=DSM 17168",
                "accession": "GCA_022179325.1",
                "taxid": 315478,
                "species_taxid": 315478,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7552,
                "matched_fragments": 64,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7078,
                "matched_fragments": 60,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptosporangium album",
                "strain": "strain=DSM 43023",
                "accession": "GCA_014203795.1",
                "taxid": 47479,
                "species_taxid": 47479,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.6936,
                "matched_fragments": 68,
                "total_fragments": 746,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 88.87,
            "contamination": 5.09,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_016235455.1",
                "gtdb_species": "s__UBA10988 sp016235455",
                "ani": 76.7858,
                "matched_fragments": 188,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA10988;o__UBA10988;f__UBA10988;g__UBA10988",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002409445.1",
                "gtdb_species": "s__UBA10988 sp002409445",
                "ani": 76.7104,
                "matched_fragments": 116,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA10988;o__UBA10988;f__UBA10988;g__UBA10988",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016183835.1",
                "gtdb_species": "s__JACPDV01 sp016183835",
                "ani": 76.5827,
                "matched_fragments": 190,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Armatimonadota;c__UBA10988;o__UBA10988;f__UBA10988;g__JACPDV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016214955.1",
                "gtdb_species": "s__JACRMN01 sp016214955",
                "ani": 75.1468,
                "matched_fragments": 74,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Myxococcia;o__Myxococcales;f__Anaeromyxobacteraceae;g__JACRMN01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000240225.1",
                "gtdb_species": "s__Patulibacter medicamentivorans",
                "ani": 74.7146,
                "matched_fragments": 59,
                "total_fragments": 746,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__Patulibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Armatimonadota",
        "c__UBA10988",
        "o__UBA10988",
        "f__UBA10988",
        "g__",
        "s__"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Armatimonadota",
        "c__UBA10988",
        "o__UBA10988",
        "f__UBA10988",
        "g__",
        "s__",
        "Bacteria",
        "Armatimonadota",
        "UBA10988",
        "UBA10988",
        "UBA10988",
        "g",
        "",
        "",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000014",
            "label": "activated sludge"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}