{ "type": "genome", "identifier": "GCA_013360695.1", "organism": "Phycisphaerales bacterium", "title": "Phycisphaerales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "NanJing University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013360695.1", "bioproject": "PRJNA601861", "biosample": "SAMN14239029", "wgs_master": "JABWBC000000000.1", "refseq_category": "na", "taxid": "2052180", "species_taxid": "2052180", "organism_name": "Phycisphaerales bacterium", "infraspecific_name": "", "isolate": "MAG_20", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/18", "asm_name": "ASM1336069v1", "submitter": "NanJing University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/360/695/GCA_013360695.1_ASM1336069v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-18", "dateModified": "2020-06-18", "datePublished": "2020-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Phycisphaerales bacterium" ], "sample_taxid": [ "2052180" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:NanJing" ], "sample_host_location_id": [], "data_size": "1.061 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3840552", "Number of Sequences": "228", "Longest Sequences (bp)": "93181", "N50 (bp)": "23278", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "2962", "Average Protein Length": "348.9", "Coding Ratio (%)": "80.7", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucisphaera calidilacus", "strain": "strain=Pan265", "accession": "GCA_007748075.1", "taxid": 2527982, "species_taxid": 2527982, "relation_to_type": "type", "validated": true, "ani": 76.4711, "matched_fragments": 64, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algisphaera agarilytica", "strain": "strain=DSM 103725", "accession": "GCA_014207595.1", "taxid": 1385975, "species_taxid": 1385975, "relation_to_type": "type", "validated": true, "ani": 76.1098, "matched_fragments": 78, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=NBRC 102666", "accession": "GCA_000284115.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 75.7886, "matched_fragments": 100, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=DSM 103959", "accession": "GCA_014207395.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 75.7867, "matched_fragments": 100, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Humisphaera borealis", "strain": "strain=M1803", "accession": "GCA_015169395.1", "taxid": 2807512, "species_taxid": 2807512, "relation_to_type": "type", "validated": true, "ani": 75.7708, "matched_fragments": 69, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia sociabilis", "strain": "strain=GM2012", "accession": "GCA_003977685.1", "taxid": 2080755, "species_taxid": 2080755, "relation_to_type": "type", "validated": true, "ani": 75.3217, "matched_fragments": 79, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 75.305, "matched_fragments": 109, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas fluminis", "strain": "strain=HR-BB", "accession": "GCA_002930645.1", "taxid": 2086571, "species_taxid": 2086571, "relation_to_type": "type", "validated": true, "ani": 75.0765, "matched_fragments": 62, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=T26", "accession": "GCA_000767175.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 74.9915, "matched_fragments": 76, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas carbonis", "strain": "strain=CGMCC 1.10786", "accession": "GCA_014636275.1", "taxid": 1386092, "species_taxid": 1386092, "relation_to_type": "type", "validated": true, "ani": 74.9579, "matched_fragments": 81, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus interemptor", "strain": "strain=AB047A", "accession": "GCA_003668875.1", "taxid": 2316720, "species_taxid": 2316720, "relation_to_type": "type", "validated": true, "ani": 74.8845, "matched_fragments": 75, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea pudingi", "strain": "strain=CGMCC 4.7319", "accession": "GCA_014646255.1", "taxid": 1789439, "species_taxid": 1789439, "relation_to_type": "type", "validated": true, "ani": 74.8229, "matched_fragments": 77, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus normandii", "strain": "strain=DSM 45417", "accession": "GCA_003182485.1", "taxid": 1137989, "species_taxid": 1137989, "relation_to_type": "type", "validated": true, "ani": 74.816, "matched_fragments": 83, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea cavernae", "strain": "strain=CGMCC 4.7367", "accession": "GCA_014653695.1", "taxid": 2020703, "species_taxid": 2020703, "relation_to_type": "type", "validated": true, "ani": 74.7124, "matched_fragments": 95, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura geliboluensis", "strain": "strain=A8036", "accession": "GCA_005889745.1", "taxid": 882440, "species_taxid": 882440, "relation_to_type": "type", "validated": true, "ani": 74.7082, "matched_fragments": 94, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura meyerae", "strain": "strain=DSM 44715", "accession": "GCA_900188445.1", "taxid": 240840, "species_taxid": 240840, "relation_to_type": "type", "validated": true, "ani": 74.6839, "matched_fragments": 108, "total_fragments": 1177, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013360695.1", "gtdb_species": "s__JABWBC01 sp013360695", "ani": 100.0, "matched_fragments": 1169, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JABWBC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_016793195.1", "gtdb_species": "s__JABWBC01 sp016793195", "ani": 84.7736, "matched_fragments": 740, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JABWBC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015200025.1", "gtdb_species": "s__UBA2396 sp015200025", "ani": 78.5263, "matched_fragments": 230, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__UBA2396", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017303565.1", "gtdb_species": "s__JAFLCM01 sp017303565", "ani": 78.5211, "matched_fragments": 171, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAFLCM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002343325.1", "gtdb_species": "s__UBA2396 sp002343325", "ani": 78.4059, "matched_fragments": 226, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__UBA2396", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242645.1", "gtdb_species": "s__JAFEBO01 sp018242645", "ani": 78.1894, "matched_fragments": 188, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAFEBO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360675.1", "gtdb_species": "s__JABWBB01 sp013360675", "ani": 77.877, "matched_fragments": 207, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JABWBB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.57", "min_intra_species_ani": "95.57", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016793805.1", "gtdb_species": "s__JAEUIZ01 sp016793805", "ani": 77.8444, "matched_fragments": 224, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAEUIZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018242625.1", "gtdb_species": "s__JAFEBO01 sp018242625", "ani": 77.8339, "matched_fragments": 184, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAFEBO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903929885.1", "gtdb_species": "s__UBA2402 sp903929885", "ani": 77.6746, "matched_fragments": 193, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__UBA2402", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.77", "min_intra_species_ani": "99.77", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016742075.1", "gtdb_species": "s__JACVCL01 sp016742075", "ani": 77.6612, "matched_fragments": 176, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JACVCL01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016794945.1", "gtdb_species": "s__JAEUIX01 sp016794945", "ani": 77.5513, "matched_fragments": 106, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAEUIX01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016873295.1", "gtdb_species": "s__VGXM01 sp016873295", "ani": 77.4592, "matched_fragments": 233, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__VGXM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016124375.1", "gtdb_species": "s__RI-211 sp016124375", "ani": 77.4448, "matched_fragments": 157, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__RI-211", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016709445.1", "gtdb_species": "s__PNC22 sp016709445", "ani": 77.3384, "matched_fragments": 185, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__PNC22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822085.1", "gtdb_species": "s__WM-009 sp013822085", "ani": 77.0617, "matched_fragments": 146, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__WM-009", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_016794865.1", "gtdb_species": "s__JAEUJB01 sp016794865", "ani": 77.054, "matched_fragments": 156, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__JAEUJB01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007693765.1", "gtdb_species": "s__RECZ01 sp007693765", "ani": 76.964, "matched_fragments": 153, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__RECZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013285505.1", "gtdb_species": "s__PNC22 sp013285505", "ani": 76.904, "matched_fragments": 197, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__PNC22", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007124345.1", "gtdb_species": "s__SLFH01 sp007124345", "ani": 76.8994, "matched_fragments": 138, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__SLFH01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.92", "min_intra_species_ani": "98.92", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002429045.1", "gtdb_species": "s__UBA6054 sp002429045", "ani": 76.774, "matched_fragments": 132, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__UBA6054", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007693965.1", "gtdb_species": "s__RECQ01 sp007693965", "ani": 76.6951, "matched_fragments": 158, "total_fragments": 1177, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__UBA1924;g__RECQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 25.0, "optimum_ph": null, "genome_size": 3884381.5, "gc_content": 72.147, "coding_genes": 3146.0, "rRNA16S_genes": 1.0, "tRNA_genes": 46.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__UBA1924", "g__JABWBC01", "s__JABWBC01 sp013360695" ], "_genome_taxon": [ "Phycisphaerales", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__Phycisphaerae", "o__Phycisphaerales", "f__UBA1924", "g__JABWBC01", "s__JABWBC01 sp013360695", "Bacteria", "Planctomycetota", "Phycisphaerae", "Phycisphaerales", "UBA1924", "JABWBC01", "JABWBC01", "sp013360695" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }