{ "type": "genome", "identifier": "GCA_013360885.1", "organism": "Candidatus Jettenia caeni", "title": "Candidatus Jettenia caeni", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "NanJing University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013360885.1", "bioproject": "PRJNA601861", "biosample": "SAMN14239018", "wgs_master": "JABWAR000000000.1", "refseq_category": "na", "taxid": "247490", "species_taxid": "247490", "organism_name": "Candidatus Jettenia caeni", "infraspecific_name": "", "isolate": "MAG_9", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/18", "asm_name": "ASM1336088v1", "submitter": "NanJing University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/360/885/GCA_013360885.1_ASM1336088v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-18", "dateModified": "2020-06-18", "datePublished": "2020-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Jettenia caeni" ], "sample_taxid": [ "247490" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:NanJing" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3477710", "Number of Sequences": "380", "Longest Sequences (bp)": "69625", "N50 (bp)": "12533", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.6", "Number of CDSs": "2712", "Average Protein Length": "304.1", "Coding Ratio (%)": "71.1", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000296795.1", "gtdb_species": "s__Jettenia caeni", "ani": 99.4043, "matched_fragments": 926, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Jettenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.95", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_005524015.1", "gtdb_species": "s__Jettenia ecosi", "ani": 94.2363, "matched_fragments": 756, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Jettenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013360945.1", "gtdb_species": "s__Brocadia sp013360945", "ani": 78.2462, "matched_fragments": 220, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015075005.1", "gtdb_species": "s__Brocadia sp015075005", "ani": 77.1078, "matched_fragments": 192, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000949635.1", "gtdb_species": "s__Brocadia sinica", "ani": 77.1044, "matched_fragments": 238, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.24", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_011525665.1", "gtdb_species": "s__Brocadia sp011525665", "ani": 76.8036, "matched_fragments": 166, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001824485.1", "gtdb_species": "s__2-12-FULL-39-13 sp001824485", "ani": 76.7067, "matched_fragments": 131, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__2-12-FULL-39-13", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.73", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.75", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900696655.1", "gtdb_species": "s__Jettenia sp900696655", "ani": 76.6591, "matched_fragments": 195, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Jettenia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000987375.1", "gtdb_species": "s__Brocadia fulgida", "ani": 76.6161, "matched_fragments": 141, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__Brocadia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.40", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_018968795.1", "gtdb_species": "s__REEB58 sp018968795", "ani": 76.4528, "matched_fragments": 144, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__REEB58", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015661205.1", "gtdb_species": "s__JACVXV01 sp015661205", "ani": 76.1695, "matched_fragments": 60, "total_fragments": 972, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Brocadiae;o__Brocadiales;f__Brocadiaceae;g__JACVXV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__Brocadiia", "o__Brocadiales", "f__Brocadiaceae", "g__Jettenia", "s__Jettenia caeni" ], "_genome_taxon": [ "Candidatus", "Jettenia", "caeni", "d__Bacteria", "p__Planctomycetota", "c__Brocadiia", "o__Brocadiales", "f__Brocadiaceae", "g__Jettenia", "s__Jettenia caeni", "Bacteria", "Planctomycetota", "Brocadiia", "Brocadiales", "Brocadiaceae", "Jettenia", "Jettenia", "caeni" ], "_meo": [ { "id": "MEO_0000014", "label": "activated sludge" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }