{ "type": "genome", "identifier": "GCA_013362655.1", "organism": "Gemmatimonadaceae bacterium", "title": "Gemmatimonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Arizona State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013362655.1", "bioproject": "PRJNA622594", "biosample": "SAMN14571688", "wgs_master": "JABFVS000000000.1", "refseq_category": "na", "taxid": "2026741", "species_taxid": "2026741", "organism_name": "Gemmatimonadaceae bacterium", "infraspecific_name": "", "isolate": "Bin3.21", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/18", "asm_name": "ASM1336265v1", "submitter": "Arizona State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/362/655/GCA_013362655.1_ASM1336265v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-18", "dateModified": "2020-06-18", "datePublished": "2020-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Gemmatimonadaceae bacterium" ], "sample_taxid": [ "2026741" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Poamoho, Hawaii" ], "sample_host_location_id": [], "data_size": "0.997 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.82, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3676135", "Number of Sequences": "514", "Longest Sequences (bp)": "40555", "N50 (bp)": "8880", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.2", "Number of CDSs": "2919", "Average Protein Length": "313.1", "Coding Ratio (%)": "74.6", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gemmatirosa kalamazoonensis", "strain": "strain=KBS708", "accession": "GCA_000522985.1", "taxid": 861299, "species_taxid": 861299, "relation_to_type": "type", "validated": true, "ani": 77.6667, "matched_fragments": 520, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas groenlandica", "strain": "strain=TET16", "accession": "GCA_013004105.1", "taxid": 2732249, "species_taxid": 2732249, "relation_to_type": "type", "validated": true, "ani": 76.3649, "matched_fragments": 137, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas aurantiaca", "strain": "strain=T-27", "accession": "GCA_000010305.1", "taxid": 173480, "species_taxid": 173480, "relation_to_type": "type", "validated": true, "ani": 76.321, "matched_fragments": 91, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmatimonas phototrophica", "strain": "strain=AP64", "accession": "GCA_000695095.2", "taxid": 1379270, "species_taxid": 1379270, "relation_to_type": "type", "validated": true, "ani": 76.1799, "matched_fragments": 70, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=CB-286315", "accession": "GCA_013000925.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.6997, "matched_fragments": 143, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Longimicrobium terrae", "strain": "strain=DSM 29007", "accession": "GCA_014202995.1", "taxid": 1639882, "species_taxid": 1639882, "relation_to_type": "type", "validated": true, "ani": 75.6816, "matched_fragments": 145, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces abyssomicinicus", "strain": "strain=CHI39", "accession": "GCA_008974245.1", "taxid": 574929, "species_taxid": 574929, "relation_to_type": "type", "validated": true, "ani": 75.0258, "matched_fragments": 121, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sandaracinus amylolyticus", "strain": "strain=DSM 53668", "accession": "GCA_000737325.2", "taxid": 927083, "species_taxid": 927083, "relation_to_type": "type", "validated": true, "ani": 74.9565, "matched_fragments": 382, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus silvisoli", "strain": "strain=c25j21", "accession": "GCA_009909145.1", "taxid": 2697031, "species_taxid": 2697031, "relation_to_type": "type", "validated": true, "ani": 74.9482, "matched_fragments": 112, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas saliphila", "strain": "strain=SJ-9", "accession": "GCA_016774335.1", "taxid": 2804919, "species_taxid": 2804919, "relation_to_type": "type", "validated": true, "ani": 74.9268, "matched_fragments": 94, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus carmarthensis", "strain": "strain=CA043D", "accession": "GCA_003611695.1", "taxid": 2316728, "species_taxid": 2316728, "relation_to_type": "type", "validated": true, "ani": 74.9036, "matched_fragments": 114, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polyangium aurulentum", "strain": "strain=SDU3-1", "accession": "GCA_005144635.2", "taxid": 2567896, "species_taxid": 2567896, "relation_to_type": "type", "validated": true, "ani": 74.8966, "matched_fragments": 241, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 74.8775, "matched_fragments": 177, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caatingaensis", "strain": "strain=CMAA 1322", "accession": "GCA_001187435.1", "taxid": 1678637, "species_taxid": 1678637, "relation_to_type": "type", "validated": true, "ani": 74.8712, "matched_fragments": 131, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Catenulispora acidiphila", "strain": "strain=DSM 44928", "accession": "GCA_000024025.1", "taxid": 304895, "species_taxid": 304895, "relation_to_type": "type", "validated": true, "ani": 74.8576, "matched_fragments": 135, "total_fragments": 953, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 78.82, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013361935.1", "gtdb_species": "s__JABFXC01 sp013361935", "ani": 99.8764, "matched_fragments": 915, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABFXC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.88", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_013361745.1", "gtdb_species": "s__JABFXC01 sp013361745", "ani": 85.7632, "matched_fragments": 500, "total_fragments": 953, "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__JABFXC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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