{ "type": "genome", "identifier": "GCA_013372875.1", "organism": "Gammaproteobacteria bacterium", "title": "Gammaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Georgia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013372875.1", "bioproject": "PRJNA553557", "biosample": "SAMN14488432", "wgs_master": "JABXIW000000000.1", "refseq_category": "na", "taxid": "1913989", "species_taxid": "1913989", "organism_name": "Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "HF-Din17", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/25", "asm_name": "ASM1337287v1", "submitter": "University of Georgia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/372/875/GCA_013372875.1_ASM1337287v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-25", "dateModified": "2020-06-25", "datePublished": "2020-06-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Gammaproteobacteria bacterium" ], "sample_taxid": [ "1913989" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Georgia, Sapelo Island" ], "sample_host_location_id": [], "data_size": "1.162 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 40.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4034781", "Number of Sequences": "487", "Longest Sequences (bp)": "84870", "N50 (bp)": "12701", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "3330", "Average Protein Length": "310.4", "Coding Ratio (%)": "76.9", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=ATCC 17802", "accession": "GCA_001998785.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 97.1916, "matched_fragments": 379, "total_fragments": 1106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio parahaemolyticus", "strain": "strain=ATCC 17802", "accession": "GCA_001011015.1", "taxid": 670, "species_taxid": 670, "relation_to_type": "type", "validated": true, "ani": 97.1709, "matched_fragments": 379, "total_fragments": 1106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio parahaemolyticus", "strain": 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