{ "type": "genome", "identifier": "GCA_013377015.1", "organism": "Rhodopseudomonas sp.", "title": "Rhodopseudomonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of Waterloo", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013377015.1", "bioproject": "PRJNA640240", "biosample": "SAMN15371442", "wgs_master": "JACABA000000000.1", "refseq_category": "na", "taxid": "1078", "species_taxid": "1078", "organism_name": "Rhodopseudomonas sp.", "infraspecific_name": "", "isolate": "Cfx3-05", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/30", "asm_name": "ASM1337701v1", "submitter": "University of Waterloo", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/377/015/GCA_013377015.1_ASM1337701v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-30", "dateModified": "2020-06-30", "datePublished": "2020-06-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodopseudomonas sp." ], "sample_taxid": [ "1078" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: near Kenora, Ontario, Lake 227, IISD-Experimental Lakes Area" ], "sample_host_location_id": [], "data_size": "1.325 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4825921", "Number of Sequences": "34", "Longest Sequences (bp)": "1735816", "N50 (bp)": "1411953", "Gap Ratio (%)": "0.009926", "GCcontent (%)": "64.4", "Number of CDSs": "4566", "Average Protein Length": "307.8", "Coding Ratio (%)": "87.4", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodopseudomonas rhenobacensis", "strain": "strain=DSM 12706", "accession": "GCA_014203125.1", "taxid": 87461, "species_taxid": 87461, "relation_to_type": "type", "validated": true, "ani": 83.866, "matched_fragments": 1031, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas pseudopalustris", "strain": "strain=DSM 123", "accession": "GCA_900110435.1", "taxid": 1513892, "species_taxid": 1513892, "relation_to_type": "type", "validated": true, "ani": 83.2456, "matched_fragments": 1091, "total_fragments": 1591, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas pentothenatexigens", 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