{
    "type": "genome",
    "identifier": "GCA_013388945.1",
    "organism": "Nitrososphaera sp.",
    "title": "Nitrososphaera sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of British Columbia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013388945.1",
        "bioproject": "PRJNA564648",
        "biosample": "SAMN14673727",
        "wgs_master": "JACAEH000000000.1",
        "refseq_category": "na",
        "taxid": "1971748",
        "species_taxid": "1971748",
        "organism_name": "Nitrososphaera sp.",
        "infraspecific_name": "",
        "isolate": "L.E.AR.1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/04",
        "asm_name": "ASM1338894v1",
        "submitter": "University of British Columbia",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/388/945/GCA_013388945.1_ASM1338894v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-04",
    "dateModified": "2020-07-04",
    "datePublished": "2020-07-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nitrososphaera sp."
        ],
        "sample_taxid": [
            "1971748"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Liard River"
        ],
        "sample_host_location_id": [],
        "data_size": "0.569 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1993934",
        "Number of Sequences": "31",
        "Longest Sequences (bp)": "427753",
        "N50 (bp)": "104758",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.5",
        "Number of CDSs": "2373",
        "Average Protein Length": "249.4",
        "Coding Ratio (%)": "89.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "28",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrososphaera viennensis",
                "strain": "strain=EN76",
                "accession": "GCA_000698785.1",
                "taxid": 1034015,
                "species_taxid": 1034015,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2533,
                "matched_fragments": 385,
                "total_fragments": 650,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013388945.1",
                "gtdb_species": "s__Nitrososphaera sp013388945",
                "ani": 100.0,
                "matched_fragments": 649,
                "total_fragments": 650,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000698785.1",
                "gtdb_species": "s__Nitrososphaera viennensis",
                "ani": 80.2301,
                "matched_fragments": 387,
                "total_fragments": 650,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000730285.1",
                "gtdb_species": "s__Nitrososphaera evergladensis",
                "ani": 79.6123,
                "matched_fragments": 361,
                "total_fragments": 650,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000303155.1",
                "gtdb_species": "s__Nitrososphaera gargensis",
                "ani": 77.5999,
                "matched_fragments": 213,
                "total_fragments": 650,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002501845.1",
                "gtdb_species": "s__Nitrososphaera sp002501845",
                "ani": 77.0193,
                "matched_fragments": 86,
                "total_fragments": 650,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrososphaeraceae;g__Nitrososphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "97.18",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.66",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 48.0,
        "optimum_ph": 7.4,
        "genome_size": 2833824.667,
        "gc_content": 48.3,
        "coding_genes": 3565.0,
        "rRNA16S_genes": null,
        "tRNA_genes": 34.0,
        "gram_stain": 1.0,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrososphaeraceae",
        "g__Nitrososphaera",
        "s__Nitrososphaera sp013388945"
    ],
    "_genome_taxon": [
        "Nitrososphaera",
        "sp.",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrososphaeraceae",
        "g__Nitrososphaera",
        "s__Nitrososphaera sp013388945",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrososphaeraceae",
        "Nitrososphaera",
        "Nitrososphaera",
        "sp013388945"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}