{ "type": "genome", "identifier": "GCA_013388965.1", "organism": "Pseudorhodoplanes sp.", "title": "Pseudorhodoplanes sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of British Columbia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013388965.1", "bioproject": "PRJNA564648", "biosample": "SAMN14673726", "wgs_master": "JACAEG000000000.1", "refseq_category": "na", "taxid": "1934341", "species_taxid": "1934341", "organism_name": "Pseudorhodoplanes sp.", "infraspecific_name": "", "isolate": "L.E.AP.45", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/04", "asm_name": "ASM1338896v1", "submitter": "University of British Columbia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/388/965/GCA_013388965.1_ASM1338896v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-04", "dateModified": "2020-07-04", "datePublished": "2020-07-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodoplanes sp." ], "sample_taxid": [ "1934341" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Liard River" ], "sample_host_location_id": [], "data_size": "1.128 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.78, "contamination": 4.55, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4076276", "Number of Sequences": "369", "Longest Sequences (bp)": "71217", "N50 (bp)": "15279", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.4", "Number of CDSs": "3728", "Average Protein Length": "291.2", "Coding Ratio (%)": "79.9", "Number of rRNAs": "1", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=RIPI110", "accession": "GCA_002119765.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 78.6877, "matched_fragments": 505, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=CECT 8374", "accession": "GCA_003610435.1", "taxid": 1235591, "species_taxid": 1235591, "relation_to_type": "type", "validated": true, "ani": 78.6566, "matched_fragments": 515, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_016653355.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 78.1584, "matched_fragments": 437, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 78.0843, "matched_fragments": 393, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium sediminis", "strain": "strain=S2-20-1", "accession": "GCA_018736085.1", "taxid": 2840469, "species_taxid": 2840469, "relation_to_type": "type", "validated": true, "ani": 77.9762, "matched_fragments": 390, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_023278185.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 77.958, "matched_fragments": 455, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes piscinae", "strain": "strain=DSM 19946", "accession": "GCA_003258855.1", "taxid": 444923, "species_taxid": 444923, "relation_to_type": "type", "validated": true, "ani": 77.9018, "matched_fragments": 365, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ivorense", "strain": "strain=CI-1B", "accession": "GCA_900696085.2", "taxid": 2511166, "species_taxid": 2511166, "relation_to_type": "type", "validated": true, "ani": 77.8685, "matched_fragments": 480, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 77.854, "matched_fragments": 432, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium yuanmingense", "strain": "strain=CCBAU 10071", "accession": "GCA_900094575.1", "taxid": 108015, "species_taxid": 108015, "relation_to_type": "type", "validated": true, "ani": 77.8502, "matched_fragments": 438, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium embrapense", "strain": "strain=SEMIA 6208", "accession": "GCA_001189235.2", "taxid": 630921, "species_taxid": 630921, "relation_to_type": "type", "validated": true, "ani": 77.8452, "matched_fragments": 437, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 77.8439, "matched_fragments": 438, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 77.828, "matched_fragments": 438, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas rhenobacensis", "strain": "strain=DSM 12706", "accession": "GCA_014203125.1", "taxid": 87461, "species_taxid": 87461, "relation_to_type": "type", "validated": true, "ani": 77.8131, "matched_fragments": 378, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 77.8102, "matched_fragments": 411, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium aeschynomenes", "strain": "strain=83002", "accession": "GCA_013178945.1", "taxid": 2734909, "species_taxid": 2734909, "relation_to_type": "type", "validated": true, "ani": 77.8088, "matched_fragments": 417, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 77.8087, "matched_fragments": 448, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 77.8081, "matched_fragments": 386, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oligotrophicum", "strain": "strain=S58", "accession": "GCA_000344805.1", "taxid": 44255, "species_taxid": 44255, "relation_to_type": "type", "validated": true, "ani": 77.8007, "matched_fragments": 413, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 77.7815, "matched_fragments": 418, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium lablabi", "strain": "strain=CCBAU 23086", "accession": "GCA_001440475.1", "taxid": 722472, "species_taxid": 722472, "relation_to_type": "suspected-type", "validated": true, "ani": 77.7669, "matched_fragments": 410, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.72, "matched_fragments": 308, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes roseus", "strain": "strain=DSM 5909", "accession": "GCA_003258865.1", "taxid": 29409, "species_taxid": 29409, "relation_to_type": "type", "validated": true, "ani": 77.708, "matched_fragments": 404, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": "strain=10BB", "accession": "GCA_020889785.1", "taxid": 2683706, "species_taxid": 2683706, "relation_to_type": "type", "validated": true, "ani": 77.7035, "matched_fragments": 428, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 77.6743, "matched_fragments": 392, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris tepida", "strain": "strain=GI", "accession": "GCA_003966715.1", "taxid": 2233851, "species_taxid": 2233851, "relation_to_type": "type", "validated": true, "ani": 77.6716, "matched_fragments": 324, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nanningense", "strain": "strain=CCBAU 53390", "accession": "GCA_004114535.1", "taxid": 1325118, "species_taxid": 1325118, "relation_to_type": "type", "validated": true, "ani": 77.6119, "matched_fragments": 426, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 77.45, "matched_fragments": 300, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 77.336, "matched_fragments": 273, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter stygius", "strain": "strain=KCTC 52518", "accession": "GCA_005144885.1", "taxid": 1940610, "species_taxid": 1940610, "relation_to_type": "type", "validated": true, "ani": 76.9151, "matched_fragments": 334, "total_fragments": 1185, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.78, "contamination": 4.55, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013388965.1", "gtdb_species": "s__Pseudorhodoplanes sp013388965", 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