{ "type": "genome", "identifier": "GCA_013389025.1", "organism": "Hydrogenophilaceae bacterium", "title": "Hydrogenophilaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of British Columbia", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013389025.1", "bioproject": "PRJNA564648", "biosample": "SAMN14673723", "wgs_master": "JACAED000000000.1", "refseq_category": "na", "taxid": "2723029", "species_taxid": "2723029", "organism_name": "Hydrogenophilaceae bacterium", "infraspecific_name": "", "isolate": "L.E.AP.33", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/04", "asm_name": "ASM1338902v1", "submitter": "University of British Columbia", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/025/GCA_013389025.1_ASM1338902v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-04", "dateModified": "2020-07-04", "datePublished": "2020-07-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Hydrogenophilaceae bacterium" ], "sample_taxid": [ "2723029" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada: Liard River" ], "sample_host_location_id": [], "data_size": "0.523 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 70.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1837412", "Number of Sequences": "109", "Longest Sequences (bp)": "110322", "N50 (bp)": "24830", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.6", "Number of CDSs": "1798", "Average Protein Length": "294.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 77.9236, "matched_fragments": 163, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 77.7232, "matched_fragments": 167, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": "GCA_003967275.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 77.536, "matched_fragments": 117, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=DSM 103923", "accession": "GCA_004346085.1", "taxid": 1914471, "species_taxid": 1914471, "relation_to_type": "type", "validated": true, "ani": 77.4668, "matched_fragments": 120, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=Gro7", "accession": "GCA_009938015.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.118, "matched_fragments": 82, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuriferula plumbiphila", "strain": "strain=NBRC 107929", "accession": "GCA_007992375.1", "taxid": 171865, "species_taxid": 171865, "relation_to_type": "type", "validated": true, "ani": 77.0885, "matched_fragments": 80, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chromobacterium amazonense", "strain": "strain=DSM 26508", "accession": "GCA_001855565.1", "taxid": 1382803, "species_taxid": 1382803, "relation_to_type": "type", "validated": true, "ani": 77.0105, "matched_fragments": 61, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azoarcus rhizosphaerae", "strain": "strain=CC-YHH848", "accession": "GCA_004801305.1", "taxid": 2565932, "species_taxid": 2565932, "relation_to_type": "type", "validated": true, "ani": 77.0026, "matched_fragments": 84, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, "relation_to_type": "type", "validated": true, "ani": 76.9392, "matched_fragments": 54, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurimicrobium lacus", "strain": "strain=skT11", "accession": "GCA_011764585.1", "taxid": 2715678, "species_taxid": 2715678, "relation_to_type": "type", "validated": true, "ani": 76.9, "matched_fragments": 77, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter cavernae", "strain": "strain=K1W11S-77", "accession": "GCA_003355495.1", "taxid": 2290923, "species_taxid": 2290923, "relation_to_type": "type", "validated": true, "ani": 76.5385, "matched_fragments": 59, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zoogloea oleivorans", "strain": "strain=Buc", "accession": "GCA_008107625.1", "taxid": 1552750, "species_taxid": 1552750, "relation_to_type": "type", "validated": true, "ani": 76.4953, "matched_fragments": 52, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquitalea magnusonii", "strain": "strain=DSM 25134", "accession": "GCA_003202035.1", "taxid": 332411, "species_taxid": 332411, "relation_to_type": "suspected-type", "validated": true, "ani": 76.4612, "matched_fragments": 53, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aromatoleum tolulyticum", "strain": "strain=ATCC 51758", "accession": "GCA_900156155.1", "taxid": 34027, "species_taxid": 34027, "relation_to_type": "type", "validated": true, "ani": 76.452, "matched_fragments": 54, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludibacterium paludis", "strain": "strain=BCRC 80514", "accession": "GCA_018802605.1", "taxid": 1225769, "species_taxid": 1225769, "relation_to_type": "type", "validated": true, "ani": 76.2881, "matched_fragments": 51, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludibacterium paludis", "strain": "strain=KCTC 32182", "accession": "GCA_014652495.1", "taxid": 1225769, "species_taxid": 1225769, "relation_to_type": "type", "validated": true, "ani": 76.288, "matched_fragments": 51, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collimonas humicola", "strain": "strain=RLT1W51", "accession": "GCA_018304945.1", "taxid": 2825886, "species_taxid": 2825886, "relation_to_type": "type", "validated": true, "ani": 76.2049, "matched_fragments": 52, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Janthinobacterium psychrotolerans", "strain": "strain=S3-2", "accession": "GCA_001677885.1", "taxid": 1747903, "species_taxid": 1747903, "relation_to_type": "type", "validated": true, "ani": 76.0651, "matched_fragments": 54, "total_fragments": 561, "ani_threshold": 95, "status": "below_threshold" } ], 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