{
    "type": "genome",
    "identifier": "GCA_013389105.1",
    "organism": "Parvularculaceae bacterium",
    "title": "Parvularculaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "University of British Columbia",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013389105.1",
        "bioproject": "PRJNA564648",
        "biosample": "SAMN14673719",
        "wgs_master": "JACADZ000000000.1",
        "refseq_category": "na",
        "taxid": "2510335",
        "species_taxid": "2510335",
        "organism_name": "Parvularculaceae bacterium",
        "infraspecific_name": "",
        "isolate": "L.E.AP.15",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/04",
        "asm_name": "ASM1338910v1",
        "submitter": "University of British Columbia",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/389/105/GCA_013389105.1_ASM1338910v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-04",
    "dateModified": "2020-07-04",
    "datePublished": "2020-07-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Parvularculaceae bacterium"
        ],
        "sample_taxid": [
            "2510335"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada: Liard River"
        ],
        "sample_host_location_id": [],
        "data_size": "0.841 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 87.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3025807",
        "Number of Sequences": "234",
        "Longest Sequences (bp)": "210713",
        "N50 (bp)": "35418",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.6",
        "Number of CDSs": "2780",
        "Average Protein Length": "303.1",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Amphiplicatus metriothermophilus",
                "strain": "strain=CGMCC 1.12710",
                "accession": "GCA_900199215.1",
                "taxid": 1519374,
                "species_taxid": 1519374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8221,
                "matched_fragments": 293,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Amphiplicatus metriothermophilus",
                "strain": "strain=DSM 105738",
                "accession": "GCA_014199495.1",
                "taxid": 1519374,
                "species_taxid": 1519374,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7991,
                "matched_fragments": 292,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinicaulis flavus",
                "strain": "strain=SY-3-19",
                "accession": "GCA_002943565.1",
                "taxid": 2058213,
                "species_taxid": 2058213,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9043,
                "matched_fragments": 252,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parvularcula oceani",
                "strain": "strain=JLT2013",
                "accession": "GCA_000733125.1",
                "taxid": 1247963,
                "species_taxid": 1247963,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8126,
                "matched_fragments": 139,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus flavus",
                "strain": "strain=D11M-2",
                "accession": "GCA_022559625.1",
                "taxid": 1526572,
                "species_taxid": 1526572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6883,
                "matched_fragments": 109,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus flavus",
                "strain": "strain=CGMCC 1.12921",
                "accession": "GCA_014640095.1",
                "taxid": 1526572,
                "species_taxid": 1526572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6774,
                "matched_fragments": 115,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus luteolus",
                "strain": "strain=CGMCC 1.14984",
                "accession": "GCA_014640455.1",
                "taxid": 1566827,
                "species_taxid": 1566827,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6246,
                "matched_fragments": 107,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisalinus luteolus",
                "strain": "strain=NH6-79",
                "accession": "GCA_009712425.2",
                "taxid": 1566827,
                "species_taxid": 1566827,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6226,
                "matched_fragments": 106,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium betae",
                "strain": "strain=CECT 5829",
                "accession": "GCA_024806875.1",
                "taxid": 244734,
                "species_taxid": 244734,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2604,
                "matched_fragments": 104,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bosea thiooxidans",
                "strain": "strain=DSM 9653",
                "accession": "GCA_900168195.1",
                "taxid": 53254,
                "species_taxid": 53254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2352,
                "matched_fragments": 129,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bosea robiniae",
                "strain": "strain=DSM 26672",
                "accession": "GCA_900102525.1",
                "taxid": 1036780,
                "species_taxid": 1036780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2222,
                "matched_fragments": 119,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium elkanii",
                "strain": "strain=USDA 76",
                "accession": "GCA_023278185.1",
                "taxid": 29448,
                "species_taxid": 29448,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1175,
                "matched_fragments": 137,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
                "strain": "strain=DSM 506",
                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1115,
                "matched_fragments": 135,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylorubrum podarium",
                "strain": "strain=DSM 15083",
                "accession": "GCA_022179745.1",
                "taxid": 200476,
                "species_taxid": 200476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9532,
                "matched_fragments": 120,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium cajani",
                "strain": "strain=1010",
                "accession": "GCA_009759665.1",
                "taxid": 1928661,
                "species_taxid": 1928661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9187,
                "matched_fragments": 125,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium viridifuturi",
                "strain": "strain=SEMIA 690",
                "accession": "GCA_001238275.1",
                "taxid": 1654716,
                "species_taxid": 1654716,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8933,
                "matched_fragments": 140,
                "total_fragments": 892,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 87.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013389105.1",
                "gtdb_species": "s__JACADZ01 sp013389105",
                "ani": 100.0,
                "matched_fragments": 888,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__JACADZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900199215.1",
                "gtdb_species": "s__Amphiplicatus metriothermophilus",
                "ani": 77.8432,
                "matched_fragments": 291,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013389125.1",
                "gtdb_species": "s__CV81 sp013389125",
                "ani": 77.4619,
                "matched_fragments": 205,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902826095.1",
                "gtdb_species": "s__CV81 sp902826095",
                "ani": 77.2299,
                "matched_fragments": 288,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001767925.1",
                "gtdb_species": "s__CV81 sp001767925",
                "ani": 77.2258,
                "matched_fragments": 248,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003506635.1",
                "gtdb_species": "s__CV81 sp003506635",
                "ani": 77.1467,
                "matched_fragments": 213,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__CV81",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016125425.1",
                "gtdb_species": "s__Amphiplicatus sp016125425",
                "ani": 77.0455,
                "matched_fragments": 214,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Amphiplicatus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002704915.1",
                "gtdb_species": "s__Marinicaulis sp002704915",
                "ani": 77.0155,
                "matched_fragments": 156,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001657385.1",
                "gtdb_species": "s__Marinicaulis sp001657385",
                "ani": 76.9493,
                "matched_fragments": 236,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002943565.1",
                "gtdb_species": "s__Marinicaulis flavus",
                "ani": 76.9059,
                "matched_fragments": 252,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Marinicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009712425.2",
                "gtdb_species": "s__Aquisalinus luteolus",
                "ani": 76.6226,
                "matched_fragments": 106,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Aquisalinus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_005502805.1",
                "gtdb_species": "s__Bosea sp005502805",
                "ani": 76.4564,
                "matched_fragments": 127,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Bosea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014199615.1",
                "gtdb_species": "s__Parvularcula dongshanensis",
                "ani": 76.4318,
                "matched_fragments": 140,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003399445.1",
                "gtdb_species": "s__Parvularcula sp003399445",
                "ani": 75.9544,
                "matched_fragments": 58,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Parvularculaceae;g__Parvularcula",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900112625.1",
                "gtdb_species": "s__Methylobacterium sp900112625",
                "ani": 75.5794,
                "matched_fragments": 145,
                "total_fragments": 892,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.166,
        "cell_length": 0.231,
        "doubling_h": null,
        "growth_tmp": 29.0,
        "optimum_tmp": 30.437,
        "optimum_ph": 7.0,
        "genome_size": 3139291.8,
        "gc_content": 60.7,
        "coding_genes": 2633.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 43.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Caulobacterales",
        "f__Parvularculaceae",
        "g__JACADZ01",
        "s__JACADZ01 sp013389105"
    ],
    "_genome_taxon": [
        "Parvularculaceae",
        "bacterium",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Alphaproteobacteria",
        "o__Caulobacterales",
        "f__Parvularculaceae",
        "g__JACADZ01",
        "s__JACADZ01 sp013389105",
        "Bacteria",
        "Pseudomonadota",
        "Alphaproteobacteria",
        "Caulobacterales",
        "Parvularculaceae",
        "JACADZ01",
        "JACADZ01",
        "sp013389105"
    ],
    "_meo": [
        {
            "id": "MEO_0000029",
            "label": "hot spring"
        },
        {
            "id": "MEO_0000066",
            "label": "sediment"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}