{ "type": "genome", "identifier": "GCA_013393545.1", "organism": "Alteromonadaceae bacterium", "title": "Alteromonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang Univiersity", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013393545.1", "bioproject": "PRJNA613738", "biosample": "SAMN14491232", "wgs_master": "JABXHG000000000.1", "refseq_category": "na", "taxid": "1916082", "species_taxid": "1916082", "organism_name": "Alteromonadaceae bacterium", "infraspecific_name": "", "isolate": "KG8", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/08", "asm_name": "ASM1339354v1", "submitter": "Chung-Ang Univiersity", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/393/545/GCA_013393545.1_ASM1339354v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-08", "dateModified": "2020-07-08", "datePublished": "2020-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Alteromonadaceae bacterium" ], "sample_taxid": [ "1916082" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Seoul" ], "sample_host_location_id": [], "data_size": "1.408 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.24, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4904117", "Number of Sequences": "846", "Longest Sequences (bp)": "82540", "N50 (bp)": "18731", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.5", "Number of CDSs": "4265", "Average Protein Length": "293.6", "Coding Ratio (%)": "76.6", "Number of rRNAs": "1", "Number of tRNAs": "31", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marinobacter persicus", "strain": "strain=KCTC 23561", "accession": "GCA_014652295.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 87.7087, "matched_fragments": 681, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter persicus", "strain": "strain=IBRC-M 10445", "accession": "GCA_900114155.1", "taxid": 930118, "species_taxid": 930118, "relation_to_type": "type", "validated": true, "ani": 87.6418, "matched_fragments": 688, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter vinifirmus", "strain": "strain=FB1", "accession": "GCA_002258215.1", "taxid": 355591, "species_taxid": 355591, "relation_to_type": "type", "validated": true, "ani": 80.1846, "matched_fragments": 486, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter oulmenensis", "strain": "strain=DSM 22359", "accession": "GCA_014201735.1", "taxid": 643747, "species_taxid": 643747, "relation_to_type": "type", "validated": true, "ani": 79.8435, "matched_fragments": 448, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter pelagius", "strain": "strain=CGMCC 1.6775", "accession": "GCA_900114925.1", "taxid": 379482, "species_taxid": 379482, "relation_to_type": "type", "validated": true, "ani": 79.4279, "matched_fragments": 408, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter nauticus", "strain": "strain=DSM 50418", "accession": "GCA_003634635.1", "taxid": 2743, "species_taxid": 2743, "relation_to_type": "type", "validated": true, "ani": 79.0018, "matched_fragments": 425, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter fuscus", "strain": "strain=NH169-3", "accession": "GCA_003007675.1", "taxid": 2109942, "species_taxid": 2109942, "relation_to_type": "type", "validated": true, "ani": 78.9823, "matched_fragments": 402, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=JCM 30472", "accession": "GCA_003007685.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.8046, "matched_fragments": 395, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter halophilus", "strain": "strain=CGMCC 1.12481", "accession": "GCA_014637865.1", "taxid": 1323740, "species_taxid": 1323740, "relation_to_type": "type", "validated": true, "ani": 78.8032, "matched_fragments": 396, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter gudaonensis", "strain": "strain=CGMCC 1.6294", "accession": "GCA_900115175.1", "taxid": 375760, "species_taxid": 375760, "relation_to_type": "type", "validated": true, "ani": 78.6067, "matched_fragments": 384, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter similis", "strain": "strain=A3d10", "accession": "GCA_000830985.1", "taxid": 1420916, "species_taxid": 1420916, "relation_to_type": "type", "validated": true, "ani": 78.225, "matched_fragments": 334, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter bryozoorum", "strain": "strain=DSM 15401", "accession": "GCA_023156245.1", "taxid": 256324, "species_taxid": 256324, "relation_to_type": "type", "validated": true, "ani": 78.2097, "matched_fragments": 294, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter koreensis", "strain": "strain=DSM 17924", "accession": "GCA_023156285.1", "taxid": 335974, "species_taxid": 335974, "relation_to_type": "type", "validated": true, "ani": 78.155, "matched_fragments": 300, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter xestospongiae", "strain": "strain=JCM 17469", "accession": "GCA_023156385.1", "taxid": 994319, "species_taxid": 994319, "relation_to_type": "type", "validated": true, "ani": 77.7943, "matched_fragments": 309, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter denitrificans", "strain": "strain=JB02H27", "accession": "GCA_008795955.1", "taxid": 2597703, "species_taxid": 2597703, "relation_to_type": "type", "validated": true, "ani": 77.7612, "matched_fragments": 311, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacter confluentis", "strain": "strain=KCTC 42705", "accession": "GCA_008795935.1", "taxid": 1697557, "species_taxid": 1697557, "relation_to_type": "type", "validated": true, "ani": 77.6103, "matched_fragments": 288, "total_fragments": 1216, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.24, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013393545.1", "gtdb_species": "s__Marinobacter sp013393545", "ani": 100.0, "matched_fragments": 1202, "total_fragments": 1216, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Oleiphilaceae;g__Marinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900114155.1", "gtdb_species": 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"Pseudomonadales", "Oleiphilaceae", "Marinobacter", "Marinobacter", "sp013393545" ], "_meo": [ { "id": "MEO_0000835", "label": "food associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }