{ "type": "genome", "identifier": "GCA_013414705.1", "organism": "Defluviicoccus sp.", "title": "Defluviicoccus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Singapore Centre for Environmental Life Sciences Engineering", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013414705.1", "bioproject": "PRJNA509764", "biosample": "SAMN15241142", "wgs_master": "", "refseq_category": "na", "taxid": "2682137", "species_taxid": "2682137", "organism_name": "Defluviicoccus sp.", "infraspecific_name": "", "isolate": "SSA4", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/14", "asm_name": "ASM1341470v1", "submitter": "Singapore Centre for Environmental Life Sciences Engineering", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/414/705/GCA_013414705.1_ASM1341470v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-14", "dateModified": "2020-07-14", "datePublished": "2020-07-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Defluviicoccus sp." ], "sample_taxid": [ "2682137" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Singapore: Jurong West" ], "sample_host_location_id": [], "data_size": "1.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4352448", "Number of Sequences": "1", "Longest Sequences (bp)": "4352448", "N50 (bp)": "4352448", "Gap Ratio (%)": "0.105573", "GCcontent (%)": "63.6", "Number of CDSs": "4149", "Average Protein Length": "290.7", "Coding Ratio (%)": "83.1", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Defluviicoccus vanus", "strain": "strain=Ben 114", "accession": "GCA_014672695.1", "taxid": 111831, "species_taxid": 111831, "relation_to_type": "type", "validated": true, "ani": 78.5104, "matched_fragments": 295, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum magnetotacticum", "strain": "strain=MS-1", "accession": "GCA_000829825.1", "taxid": 188, "species_taxid": 188, "relation_to_type": "type", "validated": true, "ani": 76.9138, "matched_fragments": 111, "total_fragments": 1450, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovibrio sodomensis", "strain": "strain=DSM 9895", 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