{ "type": "genome", "identifier": "GCA_013415575.1", "organism": "Methanomicrobiales archaeon", "title": "Methanomicrobiales archaeon", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Shenzhen University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013415575.1", "bioproject": "PRJNA587831", "biosample": "SAMN13220427", "wgs_master": "JAAEES000000000.1", "refseq_category": "na", "taxid": "2184052", "species_taxid": "2184052", "organism_name": "Methanomicrobiales archaeon", "infraspecific_name": "", "isolate": "MM3", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/15", "asm_name": "ASM1341557v1", "submitter": "Shenzhen University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/415/575/GCA_013415575.1_ASM1341557v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-15", "dateModified": "2020-07-15", "datePublished": "2020-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanomicrobiales archaeon" ], "sample_taxid": [ "2184052" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Shenzhen" ], "sample_host_location_id": [], "data_size": "0.403 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 78.27, "contamination": 9.26, "strain_heterogeneity": 75.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1412598", "Number of Sequences": "229", "Longest Sequences (bp)": "35437", "N50 (bp)": 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95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002499905.1", "gtdb_species": "s__UBA9949 sp002499905", "ani": 88.1496, "matched_fragments": 305, "total_fragments": 353, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA9949", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013415565.1", "gtdb_species": "s__UBA9949 sp013415565", "ani": 83.7448, "matched_fragments": 274, "total_fragments": 353, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA9949", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.59", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016699325.1", "gtdb_species": "s__UBA9949 sp016699325", "ani": 80.6507, "matched_fragments": 202, "total_fragments": 353, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA9949", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013331415.1", "gtdb_species": "s__UBA9949 sp10516u", "ani": 77.5453, "matched_fragments": 91, "total_fragments": 353, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__UBA9949", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018263335.1", "gtdb_species": "s__Methanolinea_A sp002067155", "ani": 76.9947, "matched_fragments": 59, "total_fragments": 353, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanomicrobia;o__Methanomicrobiales;f__Methanoregulaceae;g__Methanolinea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "99.35", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.086, "cell_length": 0.11, "doubling_h": 1.123, "growth_tmp": 35.61, "optimum_tmp": 35.621, "optimum_ph": 6.957, "genome_size": 2358795.323, "gc_content": 53.366, "coding_genes": 2554.773, "rRNA16S_genes": 2.142, "tRNA_genes": 49.618, "gram_stain": 0.027, "sporulation": 0.0, "motility": 0.285, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 0.857, "thermophilic_range_tmp": 0.142, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.117, "coccus_cell_shape": 0.823, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.029, "spiral_cell_shape": 0.029 }, "_gtdb_taxon": [ "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanospirillaceae", "g__UBA9949", "s__UBA9949 sp013415575" ], "_genome_taxon": [ "Methanomicrobiales", "archaeon", "d__Archaea", "p__Halobacteriota", "c__Methanomicrobia", "o__Methanomicrobiales", "f__Methanospirillaceae", "g__UBA9949", "s__UBA9949 sp013415575", "Archaea", "Halobacteriota", "Methanomicrobia", "Methanomicrobiales", "Methanospirillaceae", "UBA9949", "UBA9949", "sp013415575" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" }, { "id": "MEO_0000754", "label": "mangrove" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }