{
    "type": "genome",
    "identifier": "GCA_013415585.1",
    "organism": "Methanosarcinales archaeon",
    "title": "Methanosarcinales archaeon",
    "description": "derived from metagenome; fragmented assembly; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Shenzhen University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013415585.1",
        "bioproject": "PRJNA587831",
        "biosample": "SAMN13220429",
        "wgs_master": "JAAEEU000000000.1",
        "refseq_category": "na",
        "taxid": "2250255",
        "species_taxid": "2250255",
        "organism_name": "Methanosarcinales archaeon",
        "infraspecific_name": "",
        "isolate": "MS1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/15",
        "asm_name": "ASM1341558v1",
        "submitter": "Shenzhen University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/415/585/GCA_013415585.1_ASM1341558v1",
        "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-15",
    "dateModified": "2020-07-15",
    "datePublished": "2020-07-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methanosarcinales archaeon"
        ],
        "sample_taxid": [
            "2250255"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Shenzhen"
        ],
        "sample_host_location_id": [],
        "data_size": "0.401 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 75.87,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1385150",
        "Number of Sequences": "329",
        "Longest Sequences (bp)": "17170",
        "N50 (bp)": "4497",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "44.6",
        "Number of CDSs": "1159",
        "Average Protein Length": "267.4",
        "Coding Ratio (%)": "67.1",
        "Number of rRNAs": "0",
        "Number of tRNAs": "21",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methanococcoides vulcani",
                "strain": "strain=SLH 33",
                "accession": "GCA_900111645.1",
                "taxid": 1353158,
                "species_taxid": 1353158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1509,
                "matched_fragments": 260,
                "total_fragments": 287,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides vulcani",
                "strain": "",
                "accession": "GCA_900773955.1",
                "taxid": 1353158,
                "species_taxid": 1353158,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0244,
                "matched_fragments": 264,
                "total_fragments": 287,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides orientis",
                "strain": "strain=LMO-1",
                "accession": "GCA_021184045.1",
                "taxid": 2822137,
                "species_taxid": 2822137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.0111,
                "matched_fragments": 269,
                "total_fragments": 287,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides methylutens",
                "strain": "",
                "accession": "GCA_900773915.1",
                "taxid": 2226,
                "species_taxid": 2226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.9158,
                "matched_fragments": 270,
                "total_fragments": 287,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methanococcoides methylutens",
                "strain": "strain=DSM 2657",
                "accession": "GCA_000765475.1",
                "taxid": 2226,
                "species_taxid": 2226,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.915,
                "matched_fragments": 267,
                "total_fragments": 287,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 75.87,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900111645.1",
                "gtdb_species": "s__Methanococcoides vulcani",
                "ani": 89.1509,
                "matched_fragments": 260,
                "total_fragments": 287,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.94",
                "min_intra_species_ani": "95.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900774055.1",
                "gtdb_species": "s__Methanococcoides sp900774055",
                "ani": 88.1831,
                "matched_fragments": 265,
                "total_fragments": 287,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000765475.1",
                "gtdb_species": "s__Methanococcoides methylutens",
                "ani": 87.915,
                "matched_fragments": 267,
                "total_fragments": 287,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000970325.1",
                "gtdb_species": "s__Methanococcoides methylutens_A",
                "ani": 83.8072,
                "matched_fragments": 261,
                "total_fragments": 287,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000013725.1",
                "gtdb_species": "s__Methanococcoides burtonii",
                "ani": 79.1913,
                "matched_fragments": 144,
                "total_fragments": 287,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Methanosarcinia;o__Methanosarcinales;f__Methanosarcinaceae;g__Methanococcoides",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.015,
        "cell_length": 0.122,
        "doubling_h": 1.067,
        "growth_tmp": 35.781,
        "optimum_tmp": 36.373,
        "optimum_ph": 7.171,
        "genome_size": 3241894.319,
        "gc_content": 42.264,
        "coding_genes": 2973.655,
        "rRNA16S_genes": 2.562,
        "tRNA_genes": 52.005,
        "gram_stain": 0.066,
        "sporulation": 0.0,
        "motility": 0.064,
        "range_salinity": 0.75,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.8,
        "thermophilic_range_tmp": 0.2,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.108,
        "coccus_cell_shape": 0.891,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanosarcinaceae",
        "g__Methanococcoides",
        "s__"
    ],
    "_genome_taxon": [
        "Methanosarcinales",
        "archaeon",
        "d__Archaea",
        "p__Halobacteriota",
        "c__Methanosarcinia",
        "o__Methanosarcinales",
        "f__Methanosarcinaceae",
        "g__Methanococcoides",
        "s__",
        "Archaea",
        "Halobacteriota",
        "Methanosarcinia",
        "Methanosarcinales",
        "Methanosarcinaceae",
        "Methanococcoides",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        },
        {
            "id": "MEO_0000754",
            "label": "mangrove"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}