{ "type": "genome", "identifier": "GCA_013619045.1", "organism": "Desulfobacterales bacterium", "title": "Desulfobacterales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Vienna", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013619045.1", "bioproject": "PRJNA609450", "biosample": "SAMN14421529", "wgs_master": "JABXKW000000000.1", "refseq_category": "na", "taxid": "2044940", "species_taxid": "2044940", "organism_name": "Desulfobacterales bacterium", "infraspecific_name": "", "isolate": "40935_Bin_6_Spades", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/24", "asm_name": "ASM1361904v1", "submitter": "University of Vienna", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/619/045/GCA_013619045.1_ASM1361904v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-24", "dateModified": "2020-07-24", "datePublished": "2020-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfobacterales bacterium" ], "sample_taxid": [ "2044940" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Greenland: Nuuk fjord" ], "sample_host_location_id": [], "data_size": "0.924 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.04, "contamination": 1.98, "strain_heterogeneity": 40.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3142252", "Number of Sequences": "979", "Longest Sequences (bp)": "16971", "N50 (bp)": "4493", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.0", "Number of CDSs": "2325", "Average Protein Length": "285.0", "Coding Ratio (%)": "63.3", "Number of rRNAs": "1", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 85.04, "contamination": 1.98, "strain_heterogeneity": 40.0 }, "gtdb_result": [ { "accession": "GCA_012974475.1", "gtdb_species": "s__JAAXQD01 sp012974475", "ani": 98.7472, "matched_fragments": 443, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__JAAXQD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002868985.1", "gtdb_species": "s__UBA11574 sp002868985", "ani": 79.2983, "matched_fragments": 208, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__UBA11574", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003486165.1", "gtdb_species": "s__UBA11574 sp003486165", "ani": 78.9132, "matched_fragments": 164, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__UBA11574", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004193595.1", "gtdb_species": "s__S5133MH16 sp004193595", "ani": 77.9922, "matched_fragments": 195, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__S5133MH16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014383215.1", "gtdb_species": "s__Desulfatibia_A vada", "ani": 77.4528, "matched_fragments": 94, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__Desulfatibia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.39", "min_intra_species_ani": "99.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001751005.1", "gtdb_species": "s__S5133MH16 sp001751005", "ani": 77.4469, "matched_fragments": 142, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__S5133MH16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013203195.1", "gtdb_species": "s__Desulfatibia_A sp013203195", "ani": 77.3188, "matched_fragments": 70, "total_fragments": 547, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__UBA11574;g__Desulfatibia_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014382665.1", "gtdb_species": "s__Desulfatibia profunda", "ani": 76.4595, "matched_fragments": 82, 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"filament_cell_shape": 0.108, "coccobacillus_cell_shape": 0.081, "vibrio_cell_shape": 0.081, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__UBA11574", "g__JAAXQD01", "s__JAAXQD01 sp012974475" ], "_genome_taxon": [ "Desulfobacterales", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfobacteria", "o__Desulfobacterales", "f__UBA11574", "g__JAAXQD01", "s__JAAXQD01 sp012974475", "Bacteria", "Desulfobacterota", "Desulfobacteria", "Desulfobacterales", "UBA11574", "JAAXQD01", "JAAXQD01", "sp012974475" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }