{ "type": "genome", "identifier": "GCA_013619105.1", "organism": "Desulfuromonadales bacterium", "title": "Desulfuromonadales bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "University of Vienna", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013619105.1", "bioproject": "PRJNA609450", "biosample": "SAMN14421527", "wgs_master": "JABXKU000000000.1", "refseq_category": "na", "taxid": "2099678", "species_taxid": "2099678", "organism_name": "Desulfuromonadales bacterium", "infraspecific_name": "", "isolate": "42485_Bin_1", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/24", "asm_name": "ASM1361910v1", "submitter": "University of Vienna", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/619/105/GCA_013619105.1_ASM1361910v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-24", "dateModified": "2020-07-24", "datePublished": "2020-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfuromonadales bacterium" ], "sample_taxid": [ "2099678" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Greenland: Nuuk fjord" ], "sample_host_location_id": [], "data_size": "0.955 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3318199", "Number of Sequences": "205", "Longest Sequences (bp)": "160018", "N50 (bp)": "32641", "Gap Ratio (%)": "0.001356", "GCcontent (%)": "53.7", "Number of CDSs": "2870", "Average Protein Length": "312.6", "Coding Ratio (%)": "81.1", "Number of rRNAs": "1", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Syntrophotalea acetylenivorans", "strain": "strain=SFB93", "accession": "GCA_001887775.1", "taxid": 1842532, "species_taxid": 1842532, "relation_to_type": "type", "validated": true, "ani": 81.0032, "matched_fragments": 598, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea carbinolica", "strain": "strain=DSM 2380", "accession": "GCA_000012885.1", "taxid": 19, "species_taxid": 19, "relation_to_type": "type", "validated": true, "ani": 77.6215, "matched_fragments": 131, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea acetylenica", "strain": "strain=DSM 3246", "accession": "GCA_001888165.1", "taxid": 29542, "species_taxid": 29542, "relation_to_type": "type", "validated": true, "ani": 77.2281, "matched_fragments": 117, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas soudanensis", "strain": "strain=WTL", "accession": "GCA_001278055.1", "taxid": 1603606, "species_taxid": 1603606, "relation_to_type": "type", "validated": true, "ani": 76.7733, "matched_fragments": 99, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter ehrlichii", "strain": "strain=SS015", "accession": "GCA_008124615.1", "taxid": 213224, "species_taxid": 213224, "relation_to_type": "type", "validated": true, "ani": 76.7576, "matched_fragments": 74, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas versatilis", "strain": "strain=NIT-T3", "accession": "GCA_019704135.1", "taxid": 2802975, "species_taxid": 2802975, "relation_to_type": "type", "validated": true, "ani": 76.702, "matched_fragments": 120, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "", "accession": "GCA_900111775.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.5499, "matched_fragments": 86, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas acetexigens", "strain": "strain=2873", "accession": "GCA_007051125.1", "taxid": 38815, "species_taxid": 38815, "relation_to_type": "type", "validated": true, "ani": 76.501, "matched_fragments": 86, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter halelectricus", "strain": "strain=SAP-1", "accession": "GCA_025263685.1", "taxid": 2847045, "species_taxid": 2847045, "relation_to_type": "type", "validated": true, "ani": 76.4726, "matched_fragments": 73, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geothermobacter hydrogeniphilus", "strain": "strain=EPR-M", "accession": "GCA_002093115.1", "taxid": 1969733, "species_taxid": 1969733, "relation_to_type": "type", "validated": true, "ani": 76.3729, "matched_fragments": 70, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malonomonas rubra", "strain": "strain=DSM 5091", "accession": "GCA_900142125.1", "taxid": 57040, "species_taxid": 57040, "relation_to_type": "type", "validated": true, "ani": 76.1281, "matched_fragments": 50, "total_fragments": 985, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013619105.1", "gtdb_species": "s__Syntrophotalea_A sp013619105", "ani": 100.0, "matched_fragments": 982, 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600, "total_fragments": 985, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__Syntrophotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000012885.1", "gtdb_species": "s__Syntrophotalea carbinolica", "ani": 77.6215, "matched_fragments": 131, "total_fragments": 985, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota;c__Desulfuromonadia;o__Desulfuromonadales;f__Syntrophotaleaceae;g__Syntrophotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002452265.1", "gtdb_species": "s__Syntrophotalea sp002452265", "ani": 77.5779, "matched_fragments": 93, 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3929744.378, "gc_content": 58.184, "coding_genes": 3362.515, "rRNA16S_genes": 2.727, "tRNA_genes": 51.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.777, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.904, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.047, "vibrio_cell_shape": 0.047, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Desulfobacterota", "c__Desulfuromonadia", "o__Desulfuromonadales", "f__Syntrophotaleaceae", "g__Syntrophotalea_A", "s__Syntrophotalea_A sp013619105" ], "_genome_taxon": [ "Desulfuromonadales", "bacterium", "d__Bacteria", "p__Desulfobacterota", "c__Desulfuromonadia", "o__Desulfuromonadales", "f__Syntrophotaleaceae", "g__Syntrophotalea_A", "s__Syntrophotalea_A sp013619105", "Bacteria", "Desulfobacterota", "Desulfuromonadia", "Desulfuromonadales", "Syntrophotaleaceae", "Syntrophotalea", "A", "Syntrophotalea", "A", "sp013619105" ], "_meo": [ { "id": "MEO_0000040", "label": "marine sediment" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }