{ "type": "genome", "identifier": "GCA_013693775.1", "organism": "Thiobacillus sp.", "title": "Thiobacillus sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Singapore Centre for Environmental Life Sciences Engineering", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013693775.1", "bioproject": "PRJNA606905", "biosample": "SAMN15246512", "wgs_master": "", "refseq_category": "na", "taxid": "924", "species_taxid": "924", "organism_name": "Thiobacillus sp.", "infraspecific_name": "", "isolate": "SSC5", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/25", "asm_name": "ASM1369377v1", "submitter": "Singapore Centre for Environmental Life Sciences Engineering", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/693/775/GCA_013693775.1_ASM1369377v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-25", "dateModified": "2020-07-25", "datePublished": "2020-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Thiobacillus sp." ], "sample_taxid": [ "924" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Singapore: Jurong West" ], "sample_host_location_id": [], "data_size": "0.992 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3548924", "Number of Sequences": "1", "Longest Sequences (bp)": "3548924", "N50 (bp)": "3548924", "Gap Ratio (%)": "0.083180", "GCcontent (%)": "62.5", "Number of CDSs": "3516", "Average Protein Length": "303.0", "Coding Ratio (%)": "90.1", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thiobacillus thioparus", "strain": "strain=DSM 505", "accession": "GCA_000373385.1", "taxid": 931, "species_taxid": 931, "relation_to_type": "type", "validated": true, "ani": 92.0566, "matched_fragments": 935, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thiobacillus denitrificans", "strain": "strain=DSM 12475", "accession": "GCA_000376425.1", "taxid": 36861, "species_taxid": 36861, "relation_to_type": "type", "validated": true, "ani": 83.896, "matched_fragments": 713, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuritortus calidifontis", "strain": "strain=J1A", "accession": 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true, "ani": 77.9296, "matched_fragments": 239, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Crenobacter luteus", "strain": "strain=DSM 27258", "accession": "GCA_004345725.1", "taxid": 1452487, "species_taxid": 1452487, "relation_to_type": "type", "validated": true, "ani": 77.8201, "matched_fragments": 216, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=47Lol = DSM 12138", "accession": "GCA_000310205.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.6731, "matched_fragments": 224, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera linaloolentis", "strain": "strain=DSM 12138", "accession": "GCA_000621305.1", "taxid": 76112, "species_taxid": 76112, "relation_to_type": "type", "validated": true, "ani": 77.5931, "matched_fragments": 231, 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"status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 77.032, "matched_fragments": 218, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 76.8525, "matched_fragments": 211, "total_fragments": 1182, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_001899305.1", "gtdb_species": "s__Thiobacillus sp001899305", "ani": 95.8462, "matched_fragments": 1033, "total_fragments": 1182, "gtdb_taxonomy": 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