{
    "type": "genome",
    "identifier": "GCA_013694695.1",
    "organism": "Gemmatimonadales bacterium",
    "title": "Gemmatimonadales bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013694695.1",
        "bioproject": "PRJNA630822",
        "biosample": "SAMN15052176",
        "wgs_master": "JACDBX000000000.1",
        "refseq_category": "na",
        "taxid": "2448054",
        "species_taxid": "2448054",
        "organism_name": "Gemmatimonadales bacterium",
        "infraspecific_name": "",
        "isolate": "MGR_bin293",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/26",
        "asm_name": "ASM1369469v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/694/695/GCA_013694695.1_ASM1369469v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-26",
    "dateModified": "2020-07-26",
    "datePublished": "2020-07-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadales bacterium"
        ],
        "sample_taxid": [
            "2448054"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Mackay Glacier regions"
        ],
        "sample_host_location_id": [],
        "data_size": "0.779 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2804215",
        "Number of Sequences": "195",
        "Longest Sequences (bp)": "82096",
        "N50 (bp)": "21604",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "2499",
        "Average Protein Length": "322.5",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Gemmatirosa kalamazoonensis",
                "strain": "strain=KBS708",
                "accession": "GCA_000522985.1",
                "taxid": 861299,
                "species_taxid": 861299,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7871,
                "matched_fragments": 131,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gemmatimonas groenlandica",
                "strain": "strain=TET16",
                "accession": "GCA_013004105.1",
                "taxid": 2732249,
                "species_taxid": 2732249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6119,
                "matched_fragments": 55,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.4099,
                "matched_fragments": 60,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Patulibacter medicamentivorans",
                "strain": "strain=I11",
                "accession": "GCA_000240225.2",
                "taxid": 1097667,
                "species_taxid": 1097667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9715,
                "matched_fragments": 52,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nannocystis exedens",
                "strain": "strain=DSM 71",
                "accession": "GCA_002343915.1",
                "taxid": 54,
                "species_taxid": 54,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.904,
                "matched_fragments": 101,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides perillae",
                "strain": "strain=DSM 24552",
                "accession": "GCA_013409425.1",
                "taxid": 1119534,
                "species_taxid": 1119534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8986,
                "matched_fragments": 52,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nannocystis exedens",
                "strain": "strain=ATCC 25963",
                "accession": "GCA_900112715.1",
                "taxid": 54,
                "species_taxid": 54,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.865,
                "matched_fragments": 101,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides marinisabuli",
                "strain": "strain=DSM 18965",
                "accession": "GCA_013466785.1",
                "taxid": 419476,
                "species_taxid": 419476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7322,
                "matched_fragments": 53,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides marinisabuli",
                "strain": "strain=DSM 18965",
                "accession": "GCA_013409965.1",
                "taxid": 419476,
                "species_taxid": 419476,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7205,
                "matched_fragments": 55,
                "total_fragments": 831,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013694695.1",
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                "ani": 100.0,
                "matched_fragments": 826,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_016704275.1",
                "gtdb_species": "s__Palsa-1233 sp016704275",
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                "matched_fragments": 253,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.87",
                "min_intra_species_ani": "97.54",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_016720805.1",
                "gtdb_species": "s__Palsa-1233 sp016720805",
                "ani": 78.136,
                "matched_fragments": 255,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.28",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_011390645.1",
                "gtdb_species": "s__Palsa-1233 sp011390645",
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                "matched_fragments": 183,
                "total_fragments": 831,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003169895.1",
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                "matched_fragments": 158,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__Palsa-1233",
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                "mean_intra_species_ani": "99.93",
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                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 6,
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            },
            {
                "accession": "GCA_016713785.1",
                "gtdb_species": "s__JADJOM01 sp016713785",
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                "matched_fragments": 167,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JADJOM01",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCA_011362545.1",
                "gtdb_species": "s__DSTP01 sp011362545",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__DSTP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_013813675.1",
                "gtdb_species": "s__JACDDX01 sp013813675",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__GWC2-71-9;g__JACDDX01",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": null,
        "doubling_h": 1.079,
        "growth_tmp": 30.0,
        "optimum_tmp": 27.5,
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        "genome_size": 5607935.711,
        "gc_content": 67.113,
        "coding_genes": 4635.5,
        "rRNA16S_genes": 1.666,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_gtdb_taxon": [
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        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp013694695"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__Gemmatimonadales",
        "f__GWC2-71-9",
        "g__Palsa-1233",
        "s__Palsa-1233 sp013694695",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "Gemmatimonadales",
        "GWC2-71-9",
        "Palsa-1233",
        "Palsa-1233",
        "sp013694695"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}