{ "type": "genome", "identifier": "GCA_013696165.1", "organism": "Nocardioidaceae bacterium", "title": "Nocardioidaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696165.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052103", "wgs_master": "JACCZC000000000.1", "refseq_category": "na", "taxid": "1871072", "species_taxid": "1871072", "organism_name": "Nocardioidaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin220", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369616v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/165/GCA_013696165.1_ASM1369616v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioidaceae bacterium" ], "sample_taxid": [ "1871072" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.673 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.17, "contamination": 19.39, "strain_heterogeneity": 20.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2435930", "Number of Sequences": "599", "Longest Sequences (bp)": "14834", "N50 (bp)": "4471", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.0", "Number of CDSs": "1883", "Average Protein Length": "282.9", "Coding Ratio (%)": "65.6", "Number of rRNAs": "0", "Number of tRNAs": "28", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides iriomotensis", "strain": "strain=NBRC 105384", "accession": "GCA_004168035.1", "taxid": 715784, "species_taxid": 715784, "relation_to_type": "type", "validated": true, "ani": 80.441, "matched_fragments": 309, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 80.3485, "matched_fragments": 314, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 79.064, "matched_fragments": 228, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 78.9315, "matched_fragments": 235, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 78.8808, "matched_fragments": 222, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 78.8295, "matched_fragments": 227, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 78.8009, "matched_fragments": 223, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides soli", "strain": "strain=DSM 105498", "accession": "GCA_014191495.1", "taxid": 1036020, "species_taxid": 1036020, "relation_to_type": "type", "validated": true, "ani": 78.7928, "matched_fragments": 216, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides halotolerans", "strain": "strain=DSM 19273", "accession": "GCA_000422805.1", "taxid": 433660, "species_taxid": 433660, "relation_to_type": "type", "validated": true, "ani": 78.6962, "matched_fragments": 202, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 78.6792, "matched_fragments": 226, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 78.5829, "matched_fragments": 221, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=NBRC 108562", "accession": "GCA_007992395.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 78.504, "matched_fragments": 215, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides szechwanensis", "strain": "strain=CGMCC 1.11147", "accession": "GCA_900103935.1", "taxid": 1005944, "species_taxid": 1005944, "relation_to_type": "type", "validated": true, "ani": 78.5013, "matched_fragments": 217, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides baculatus", "strain": "strain=G10", "accession": "GCA_016735675.1", "taxid": 2801337, "species_taxid": 2801337, "relation_to_type": "type", "validated": true, "ani": 78.4915, "matched_fragments": 206, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides cynanchi", "strain": "strain=SB3-45", "accession": "GCA_008761635.1", "taxid": 2558918, "species_taxid": 2558918, "relation_to_type": "type", "validated": true, "ani": 78.4558, "matched_fragments": 202, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides anomalus", "strain": "strain=HKS04", "accession": "GCA_011046535.1", "taxid": 2712223, "species_taxid": 2712223, "relation_to_type": "type", "validated": true, "ani": 78.4545, "matched_fragments": 221, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides alkalitolerans", "strain": "strain=DSM 16699", "accession": "GCA_000426525.1", "taxid": 281714, "species_taxid": 281714, "relation_to_type": "type", "validated": true, "ani": 78.4073, "matched_fragments": 181, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides humilatus", "strain": "strain=BN130099", "accession": "GCA_008373755.1", "taxid": 2607660, "species_taxid": 2607660, "relation_to_type": "type", "validated": true, "ani": 78.3961, "matched_fragments": 158, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides kribbensis", "strain": "strain=DSM 16314", "accession": "GCA_015070375.1", "taxid": 305517, "species_taxid": 305517, "relation_to_type": "type", "validated": true, "ani": 78.331, "matched_fragments": 207, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 78.3263, "matched_fragments": 208, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 78.2799, "matched_fragments": 212, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrae", "strain": "strain=CGMCC 1.7056", "accession": "GCA_900112345.1", "taxid": 574651, "species_taxid": 574651, "relation_to_type": "type", "validated": true, "ani": 78.2171, "matched_fragments": 178, "total_fragments": 470, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 79.17, "contamination": 19.39, "strain_heterogeneity": 20.0 }, "gtdb_result": [ { "accession": "GCF_014395785.1", "gtdb_species": "s__Nocardioides_B mesophilus", "ani": 81.5257, "matched_fragments": 335, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__Nocardioides_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004168035.1", "gtdb_species": 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79.5709, "matched_fragments": 264, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__JABFXA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.75", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002384855.1", "gtdb_species": "s__UBA4001 sp002384855", "ani": 79.4869, "matched_fragments": 249, "total_fragments": 470, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Nocardioidaceae;g__UBA4001", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011299595.1", "gtdb_species": "s__Marmoricola_A sp011299595", "ani": 79.0244, "matched_fragments": 215, 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