{ "type": "genome", "identifier": "GCA_013696235.1", "organism": "Sporichthyaceae bacterium", "title": "Sporichthyaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696235.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052099", "wgs_master": "JACCYY000000000.1", "refseq_category": "na", "taxid": "2740536", "species_taxid": "2740536", "organism_name": "Sporichthyaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin216", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369623v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/235/GCA_013696235.1_ASM1369623v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Sporichthyaceae bacterium" ], "sample_taxid": [ "2740536" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.519 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 69.44, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1920471", "Number of Sequences": "384", "Longest Sequences (bp)": "20990", "N50 (bp)": "5789", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.4", "Number of CDSs": "1497", "Average Protein Length": "302.0", "Coding Ratio (%)": "70.6", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Marmoricola solisilvae", "strain": "strain=KIS18-7", "accession": "GCA_003725775.1", "taxid": 1542737, "species_taxid": 1542737, "relation_to_type": "type", "validated": true, "ani": 76.5448, "matched_fragments": 105, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermomonospora catenispora", "strain": "strain=3-22-3", "accession": "GCA_006363815.1", "taxid": 2493090, "species_taxid": 2493090, "relation_to_type": "type", "validated": true, "ani": 76.543, "matched_fragments": 99, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermopolyspora flexuosa", "strain": "strain=DSM 43186", "accession": "GCA_006716785.1", "taxid": 103836, "species_taxid": 103836, "relation_to_type": "type", "validated": true, "ani": 76.537, "matched_fragments": 147, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermopolyspora flexuosa", "strain": "strain=JCM 3056", "accession": "GCA_014647775.1", "taxid": 103836, "species_taxid": 103836, "relation_to_type": "type", "validated": true, "ani": 76.5343, "matched_fragments": 147, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kineosporia mesophila", "strain": "strain=JCM 16902", "accession": "GCA_021129235.1", "taxid": 566012, "species_taxid": 566012, "relation_to_type": "type", "validated": true, "ani": 76.4195, "matched_fragments": 107, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiangella asiatica", "strain": "strain=5K138", "accession": "GCA_004349065.1", "taxid": 2530372, "species_taxid": 2530372, "relation_to_type": "type", "validated": true, "ani": 76.4069, "matched_fragments": 145, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=NRRL ISP-5461", "accession": "GCA_000717345.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3933, "matched_fragments": 110, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicus", "strain": "strain=ATCC 25470", "accession": "GCA_004125245.1", "taxid": 47763, "species_taxid": 47763, "relation_to_type": "suspected-type", "validated": true, "ani": 76.3701, "matched_fragments": 114, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolymorpha cephalotaxi", "strain": "strain=DSM 45117", "accession": "GCA_013408535.1", "taxid": 504797, "species_taxid": 504797, "relation_to_type": "type", "validated": true, "ani": 76.3293, "matched_fragments": 143, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus spadix", "strain": "strain=KCTC 9252", "accession": "GCA_024055725.1", "taxid": 79912, "species_taxid": 79912, "relation_to_type": "type", "validated": true, "ani": 76.2342, "matched_fragments": 143, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 76.1997, "matched_fragments": 114, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=CGMCC4.1088", "accession": "GCA_020093395.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 76.1612, "matched_fragments": 122, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 76.1433, "matched_fragments": 143, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 76.1364, "matched_fragments": 101, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseocarneus", "strain": "strain=JCM 4580", "accession": "GCA_014655595.1", "taxid": 51201, "species_taxid": 51201, "relation_to_type": "type", "validated": true, "ani": 76.1222, "matched_fragments": 125, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=ATCC 484", "accession": "GCA_000212695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 76.1191, "matched_fragments": 128, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 76.1122, "matched_fragments": 104, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 76.0743, "matched_fragments": 127, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia merdavium", "strain": "strain=Sa2CUA9", "accession": "GCA_014836755.1", "taxid": 2762227, "species_taxid": 2762227, "relation_to_type": "type", "validated": true, "ani": 76.0705, "matched_fragments": 85, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 76.0497, "matched_fragments": 138, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruania suaedae", "strain": "strain=LR1S40", "accession": "GCA_021049265.1", "taxid": 2897774, "species_taxid": 2897774, "relation_to_type": "type", "validated": true, "ani": 75.8601, "matched_fragments": 66, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora iraqiensis", "strain": "strain=IQ-H1", "accession": "GCA_000430445.1", "taxid": 52698, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 75.8056, "matched_fragments": 86, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora biskrensis", "strain": "strain=CECT 8576", "accession": "GCA_013408175.1", "taxid": 1470178, "species_taxid": 1470178, "relation_to_type": "type", "validated": true, "ani": 75.7993, "matched_fragments": 52, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 75.7948, "matched_fragments": 157, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora iraqiensis subsp. paurometabolica", "strain": "strain=YIM 90007", "accession": "GCA_000231035.3", "taxid": 208085, "species_taxid": 52698, "relation_to_type": "type", "validated": true, "ani": 75.776, "matched_fragments": 89, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora halophila", "strain": "strain=DSM 43834", "accession": "GCA_000371785.1", "taxid": 1850, "species_taxid": 1850, "relation_to_type": "type", "validated": true, "ani": 75.646, "matched_fragments": 51, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 75.5333, "matched_fragments": 80, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium allii", "strain": "strain=20TX0166", "accession": "GCA_021271025.1", "taxid": 2878384, "species_taxid": 2878384, "relation_to_type": "type", "validated": true, "ani": 75.5064, "matched_fragments": 73, "total_fragments": 438, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 69.44, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013696235.1", "gtdb_species": "s__JACCYY01 sp013696235", "ani": 100.0, "matched_fragments": 432, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__JACCYY01;f__JACCYY01;g__JACCYY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_017848795.1", "gtdb_species": "s__JAFIHG01 sp017848795", "ani": 76.6928, "matched_fragments": 108, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Nanopelagicales;f__CAIYMF01;g__JAFIHG01", "ani_circumscription_radius": 95.0, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716785.1", "gtdb_species": "s__Thermopolyspora flexuosa", "ani": 76.5513, "matched_fragments": 146, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006363815.1", "gtdb_species": "s__Thermomonospora catenispora", "ani": 76.543, "matched_fragments": 99, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Thermomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"status": "-" }, { "accession": "GCF_000212695.1", "gtdb_species": "s__Cellulomonas fimi", "ani": 76.1191, "matched_fragments": 128, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004886325.1", "gtdb_species": "s__Cellulomonas telluris", "ani": 76.1122, "matched_fragments": 104, "total_fragments": 438, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Cellulomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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