{ "type": "genome", "identifier": "GCA_013696465.1", "organism": "Pyrinomonadaceae bacterium", "title": "Pyrinomonadaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696465.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052088", "wgs_master": "JACCYN000000000.1", "refseq_category": "na", "taxid": "2283092", "species_taxid": "2283092", "organism_name": "Pyrinomonadaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin205", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369646v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/465/GCA_013696465.1_ASM1369646v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Pyrinomonadaceae bacterium" ], "sample_taxid": [ "2283092" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.928 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3286123", "Number of Sequences": "392", "Longest Sequences (bp)": "55342", "N50 (bp)": "11389", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.6", "Number of CDSs": "2536", "Average Protein Length": "319.2", "Coding Ratio (%)": "73.9", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pyrinomonas methylaliphatogenes", "strain": "strain=type strain:K22", "accession": "GCA_000820845.2", "taxid": 454194, "species_taxid": 454194, "relation_to_type": "type", "validated": true, "ani": 76.2249, "matched_fragments": 104, "total_fragments": 893, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_013696465.1", "gtdb_species": "s__JACCYN01 sp013696465", "ani": 100.0, "matched_fragments": 878, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACCYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_013695245.1", "gtdb_species": "s__JACCYN01 sp013695245", "ani": 81.4466, "matched_fragments": 499, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACCYN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003223935.1", "gtdb_species": "s__QHXQ01 sp003223935", "ani": 77.1492, "matched_fragments": 219, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013816505.1", "gtdb_species": "s__JACDEG01 sp013816505", "ani": 76.8251, "matched_fragments": 180, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACDEG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013813825.1", "gtdb_species": "s__JACCRA01 sp013813825", "ani": 76.558, "matched_fragments": 128, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACCRA01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014379795.1", "gtdb_species": "s__JACMLC01 sp014379795", "ani": 76.5427, "matched_fragments": 71, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__JACMLC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003222975.1", "gtdb_species": "s__QHXN01 sp003222975", "ani": 76.4919, "matched_fragments": 177, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019242475.1", "gtdb_species": "s__QHXN01 sp019242475", "ani": 76.3379, "matched_fragments": 153, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__QHXN01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000820845.2", "gtdb_species": "s__Pyrinomonas methylaliphatogenes", "ani": 76.2645, "matched_fragments": 104, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__Pyrinomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001920415.1", "gtdb_species": "s__3-1-20CM-3-53-8 sp001920415", "ani": 76.0303, "matched_fragments": 93, "total_fragments": 893, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Blastocatellia;o__Pyrinomonadales;f__Pyrinomonadaceae;g__3-1-20CM-3-53-8", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.80", "min_intra_species_ani": "99.80", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Acidobacteriota", "c__Blastocatellia", "o__Pyrinomonadales", "f__Pyrinomonadaceae", "g__JACCYN01", "s__JACCYN01 sp013696465" ], "_genome_taxon": [ "Pyrinomonadaceae", "bacterium", "d__Bacteria", "p__Acidobacteriota", "c__Blastocatellia", "o__Pyrinomonadales", "f__Pyrinomonadaceae", "g__JACCYN01", "s__JACCYN01 sp013696465", "Bacteria", "Acidobacteriota", "Blastocatellia", "Pyrinomonadales", "Pyrinomonadaceae", "JACCYN01", "JACCYN01", "sp013696465" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }