{ "type": "genome", "identifier": "GCA_013696495.1", "organism": "Solirubrobacterales bacterium", "title": "Solirubrobacterales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696495.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052086", "wgs_master": "JACCYL000000000.1", "refseq_category": "na", "taxid": "1909295", "species_taxid": "1909295", "organism_name": "Solirubrobacterales bacterium", "infraspecific_name": "", "isolate": "MGR_bin203", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369649v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/495/GCA_013696495.1_ASM1369649v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirubrobacterales bacterium" ], "sample_taxid": [ "1909295" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.590 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 77.08, "contamination": 1.39, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2126859", "Number of Sequences": "555", "Longest Sequences (bp)": "15055", "N50 (bp)": "4016", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "1735", "Average Protein Length": "270.8", "Coding Ratio (%)": "66.3", "Number of rRNAs": "0", "Number of tRNAs": "35", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 76.6379, "matched_fragments": 151, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 76.5027, "matched_fragments": 123, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 76.4931, "matched_fragments": 115, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoleophilum album", "strain": "strain=ATCC 35263", "accession": "GCA_900108055.1", "taxid": 29539, "species_taxid": 29539, "relation_to_type": "type", "validated": true, "ani": 76.4475, "matched_fragments": 54, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 76.2487, "matched_fragments": 113, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 76.1637, "matched_fragments": 138, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gaiella occulta", "strain": "strain=F2-233", "accession": "GCA_003351045.1", "taxid": 1002870, "species_taxid": 1002870, "relation_to_type": "type", "validated": true, "ani": 76.1023, "matched_fragments": 51, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea marina", "strain": "strain=SCSIO 60955", "accession": "GCA_018141525.1", "taxid": 2843215, "species_taxid": 2843215, "relation_to_type": "type", "validated": true, "ani": 75.8404, "matched_fragments": 64, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Miltoncostaea oceani", "strain": "strain=SCSIO 61214", "accession": "GCA_018141545.1", "taxid": 2843216, "species_taxid": 2843216, "relation_to_type": "type", "validated": true, "ani": 75.7852, "matched_fragments": 60, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 75.7067, "matched_fragments": 84, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinocorallia herbida", "strain": "strain=DSM 44254", "accession": "GCA_003751225.1", "taxid": 58109, "species_taxid": 58109, "relation_to_type": "type", "validated": true, "ani": 74.9331, "matched_fragments": 58, "total_fragments": 397, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 77.08, "contamination": 1.39, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_018263295.1", "gtdb_species": "s__RHKX01 sp018263295", "ani": 80.0888, 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