{ "type": "genome", "identifier": "GCA_013696745.1", "organism": "Nocardioidaceae bacterium", "title": "Nocardioidaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696745.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052074", "wgs_master": "JACCXZ000000000.1", "refseq_category": "na", "taxid": "1871072", "species_taxid": "1871072", "organism_name": "Nocardioidaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin191", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369674v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/745/GCA_013696745.1_ASM1369674v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioidaceae bacterium" ], "sample_taxid": [ "1871072" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.710 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2607476", "Number of Sequences": "202", "Longest Sequences (bp)": "60016", "N50 (bp)": "20047", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "2498", "Average Protein Length": "293.1", "Coding Ratio (%)": "84.2", "Number of rRNAs": "0", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 78.3635, "matched_fragments": 308, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 78.1666, "matched_fragments": 266, "total_fragments": 764, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola aurantiacus", "strain": "strain=DSM 12652", 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