{
    "type": "genome",
    "identifier": "GCA_013696835.1",
    "organism": "Gemmatimonadota bacterium",
    "title": "Gemmatimonadota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013696835.1",
        "bioproject": "PRJNA630822",
        "biosample": "SAMN15052070",
        "wgs_master": "JACCXV000000000.1",
        "refseq_category": "na",
        "taxid": "2026742",
        "species_taxid": "2026742",
        "organism_name": "Gemmatimonadota bacterium",
        "infraspecific_name": "",
        "isolate": "MGR_bin187",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/26",
        "asm_name": "ASM1369683v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/835/GCA_013696835.1_ASM1369683v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-26",
    "dateModified": "2020-07-26",
    "datePublished": "2020-07-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gemmatimonadota bacterium"
        ],
        "sample_taxid": [
            "2026742"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Mackay Glacier regions"
        ],
        "sample_host_location_id": [],
        "data_size": "0.652 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2365567",
        "Number of Sequences": "431",
        "Longest Sequences (bp)": "30019",
        "N50 (bp)": "6870",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "1839",
        "Average Protein Length": "301.9",
        "Coding Ratio (%)": "70.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "35",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gemmatirosa kalamazoonensis",
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                "species_taxid": 861299,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=DSM 29007",
                "accession": "GCA_014202995.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CECT 8660",
                "accession": "GCA_014198875.1",
                "taxid": 1639882,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 75.5275,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longimicrobium terrae",
                "strain": "strain=CB-286315",
                "accession": "GCA_013000925.1",
                "taxid": 1639882,
                "species_taxid": 1639882,
                "relation_to_type": "type",
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                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=JCM 3313",
                "accession": "GCA_014648515.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.9143,
                "matched_fragments": 55,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix coeruleofusca",
                "strain": "strain=DSM 43679",
                "accession": "GCA_017876325.1",
                "taxid": 33919,
                "species_taxid": 33919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8358,
                "matched_fragments": 60,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tautonia plasticadhaerens",
                "strain": "strain=ElP",
                "accession": "GCA_007752535.1",
                "taxid": 2527974,
                "species_taxid": 2527974,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.7607,
                "matched_fragments": 53,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharothrix ecbatanensis",
                "strain": "strain=DSM 45486",
                "accession": "GCA_014205015.1",
                "taxid": 1105145,
                "species_taxid": 1105145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.5533,
                "matched_fragments": 52,
                "total_fragments": 557,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCA_013696835.1",
                "gtdb_species": "s__JACCXV01 sp013696835",
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                "matched_fragments": 553,
                "total_fragments": 557,
                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__JACCXV01;f__JACCXV01;g__JACCXV01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_013361335.1",
                "gtdb_species": "s__AG11 sp013361335",
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                "matched_fragments": 63,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.60",
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                "mean_intra_species_af": "0.90",
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                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_017881505.1",
                "gtdb_species": "s__JADGQW01 sp017881505",
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                "matched_fragments": 51,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__JACORV01;g__JADGQW01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000522985.1",
                "gtdb_species": "s__Gemmatirosa kalamazoonesis",
                "ani": 75.5977,
                "matched_fragments": 100,
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Gemmatimonadales;f__Gemmatimonadaceae;g__Gemmatirosa",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017881445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Gemmatimonadota;c__Gemmatimonadetes;o__Longimicrobiales;f__RSA9;g__JADGQX01",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_001788495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__GWA2-73-35",
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            },
            {
                "accession": "GCA_011058515.1",
                "gtdb_species": "s__DSHD01 sp011058515",
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                "status": "-"
            },
            {
                "accession": "GCA_003220335.1",
                "gtdb_species": "s__AR12 sp003220335",
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                "gtdb_taxonomy": "d__Bacteria;p__Methylomirabilota;c__Methylomirabilia;o__Rokubacteriales;f__CSP1-6;g__AR12",
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            },
            {
                "accession": "GCA_003221615.1",
                "gtdb_species": "s__AR31 sp003221615",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__JACCXV01",
        "f__JACCXV01",
        "g__JACCXV01",
        "s__JACCXV01 sp013696835"
    ],
    "_genome_taxon": [
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        "bacterium",
        "d__Bacteria",
        "p__Gemmatimonadota",
        "c__Gemmatimonadetes",
        "o__JACCXV01",
        "f__JACCXV01",
        "g__JACCXV01",
        "s__JACCXV01 sp013696835",
        "Bacteria",
        "Gemmatimonadota",
        "Gemmatimonadetes",
        "JACCXV01",
        "JACCXV01",
        "JACCXV01",
        "JACCXV01",
        "sp013696835"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}