{ "type": "genome", "identifier": "GCA_013696875.1", "organism": "Thermoleophilaceae bacterium", "title": "Thermoleophilaceae bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013696875.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052069", "wgs_master": "JACCXU000000000.1", "refseq_category": "na", "taxid": "2732252", "species_taxid": "2732252", "organism_name": "Thermoleophilaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin186", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369687v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/696/875/GCA_013696875.1_ASM1369687v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermoleophilaceae bacterium" ], "sample_taxid": [ "2732252" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.353 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 55.74, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1294896", "Number of Sequences": "342", "Longest Sequences (bp)": "19197", "N50 (bp)": "3977", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "1074", "Average Protein Length": "262.4", "Coding Ratio (%)": "65.3", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 77.318, "matched_fragments": 121, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 77.2828, "matched_fragments": 133, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 77.2615, "matched_fragments": 125, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermoleophilum album", "strain": "strain=ATCC 35263", "accession": "GCA_900108055.1", "taxid": 29539, "species_taxid": 29539, "relation_to_type": "type", "validated": true, "ani": 76.8263, "matched_fragments": 59, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 76.6817, "matched_fragments": 100, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 75.9128, "matched_fragments": 78, "total_fragments": 227, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 55.74, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013698335.1", "gtdb_species": "s__JACCVG01 sp013698335", "ani": 78.8216, "matched_fragments": 91, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JACCVG01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005885165.1", "gtdb_species": "s__AC-37 sp005885165", "ani": 78.4944, "matched_fragments": 97, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__AC-37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.17", "min_intra_species_ani": "99.17", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013696905.1", "gtdb_species": "s__JACCXP01 sp013696905", "ani": 78.4893, "matched_fragments": 87, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JACCXP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013812065.1", "gtdb_species": "s__JACCUC01 sp013812065", "ani": 78.3624, "matched_fragments": 103, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JACCUC01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019246335.1", "gtdb_species": "s__AC-37 sp019246335", "ani": 78.3365, "matched_fragments": 103, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__AC-37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016929195.1", "gtdb_species": "s__JACVRW01 sp016929195", "ani": 78.2994, "matched_fragments": 123, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JACVRW01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005883295.1", "gtdb_species": "s__AC-37 sp005883295", "ani": 78.1068, "matched_fragments": 87, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__AC-37", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_012718975.1", "gtdb_species": "s__JAAYBF01 sp012718975", "ani": 77.8887, "matched_fragments": 129, "total_fragments": 227, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Thermoleophilaceae;g__JAAYBF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.0, "cell_length": null, "doubling_h": 0.655, "growth_tmp": 56.25, "optimum_tmp": null, "optimum_ph": null, "genome_size": 2207191.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__Thermoleophilaceae", "g__JAUJOA01", "s__" ], "_genome_taxon": [ "Thermoleophilaceae", "bacterium", "d__Bacteria", "p__Actinomycetota", "c__Thermoleophilia", "o__Solirubrobacterales", "f__Thermoleophilaceae", "g__JAUJOA01", "s__", "Bacteria", "Actinomycetota", "Thermoleophilia", "Solirubrobacterales", "Thermoleophilaceae", "JAUJOA01", "s", "", "" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }