{ "type": "genome", "identifier": "GCA_013697535.1", "organism": "Solirubrobacterales bacterium", "title": "Solirubrobacterales bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013697535.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052040", "wgs_master": "JACCWR000000000.1", "refseq_category": "na", "taxid": "1909295", "species_taxid": "1909295", "organism_name": "Solirubrobacterales bacterium", "infraspecific_name": "", "isolate": "MGR_bin157", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369753v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/697/535/GCA_013697535.1_ASM1369753v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Solirubrobacterales bacterium" ], "sample_taxid": [ "1909295" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.432 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.73, "contamination": 5.56, "strain_heterogeneity": 50.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1577462", "Number of Sequences": "438", "Longest Sequences (bp)": "12340", "N50 (bp)": "3675", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.3", "Number of CDSs": "1270", "Average Protein Length": "259.2", "Coding Ratio (%)": "62.6", "Number of rRNAs": "0", "Number of tRNAs": "19", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capillimicrobium parvum", "strain": "strain=0166_1", "accession": "GCA_021172045.1", "taxid": 2884022, "species_taxid": 2884022, "relation_to_type": "type", "validated": true, "ani": 79.1567, "matched_fragments": 152, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraconexibacter algicola", "strain": "strain=Seoho-28", "accession": "GCA_003044185.1", "taxid": 2133960, "species_taxid": 2133960, "relation_to_type": "type", "validated": true, "ani": 78.9165, "matched_fragments": 130, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Baekduia soli", "strain": "strain=BR7-21", "accession": "GCA_007970665.1", "taxid": 496014, "species_taxid": 496014, "relation_to_type": "type", "validated": true, "ani": 78.8516, "matched_fragments": 154, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter arvalis", "strain": "strain=DSM 23288", "accession": "GCA_014199525.1", "taxid": 912552, "species_taxid": 912552, "relation_to_type": "type", "validated": true, "ani": 78.2095, "matched_fragments": 141, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 77.9604, "matched_fragments": 134, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 77.6795, "matched_fragments": 133, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter americanus", "strain": "strain=DSM 16676", "accession": "GCA_000420025.1", "taxid": 588672, "species_taxid": 588672, "relation_to_type": "type", "validated": true, "ani": 77.4703, "matched_fragments": 111, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Patulibacter minatonensis", "strain": "strain=DSM 18081", "accession": "GCA_000519325.1", "taxid": 298163, "species_taxid": 298163, "relation_to_type": "type", "validated": true, "ani": 77.4156, "matched_fragments": 110, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces agglutinans", "strain": "strain=CFH 90414", "accession": "GCA_009647605.1", "taxid": 2662258, "species_taxid": 2662258, "relation_to_type": "type", "validated": true, "ani": 75.3227, "matched_fragments": 53, "total_fragments": 274, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.73, "contamination": 5.56, "strain_heterogeneity": 50.0 }, "gtdb_result": [ { "accession": "GCA_013813955.1", "gtdb_species": "s__CADCVQ01 sp013813955", "ani": 79.4977, "matched_fragments": 110, "total_fragments": 274, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Thermoleophilia;o__Solirubrobacterales;f__Solirubrobacteraceae;g__CADCVQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902806175.1", "gtdb_species": "s__CADCVQ01 sp902806175", "ani": 79.4757, "matched_fragments": 137, "total_fragments": 274, "gtdb_taxonomy": 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