{ "type": "genome", "identifier": "GCA_013697905.1", "organism": "Nocardioidaceae bacterium", "title": "Nocardioidaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013697905.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052022", "wgs_master": "JACCVZ000000000.1", "refseq_category": "na", "taxid": "1871072", "species_taxid": "1871072", "organism_name": "Nocardioidaceae bacterium", "infraspecific_name": "", "isolate": "MGR_bin139", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369790v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/697/905/GCA_013697905.1_ASM1369790v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardioidaceae bacterium" ], "sample_taxid": [ "1871072" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.797 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2878447", "Number of Sequences": "394", "Longest Sequences (bp)": "51318", "N50 (bp)": "10440", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.8", "Number of CDSs": "2508", "Average Protein Length": "298.9", "Coding Ratio (%)": "78.1", "Number of rRNAs": "1", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardioides ungokensis", "strain": "strain=LMG 28591", "accession": "GCA_013466985.1", "taxid": 1643322, "species_taxid": 1643322, "relation_to_type": "type", "validated": true, "ani": 77.7323, "matched_fragments": 250, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 77.7291, "matched_fragments": 304, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides exalbidus", "strain": "strain=DSM 22017", "accession": "GCA_900105585.1", "taxid": 402596, "species_taxid": 402596, "relation_to_type": "type", "validated": true, "ani": 77.6622, "matched_fragments": 224, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ginsengisegetis", "strain": "strain=DSM 21349", "accession": "GCA_014138045.1", "taxid": 661491, "species_taxid": 661491, "relation_to_type": "type", "validated": true, "ani": 77.6046, "matched_fragments": 230, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides okcheonensis", "strain": "strain=MMS20-HV4-12", "accession": "GCA_020991065.1", "taxid": 2894081, "species_taxid": 2894081, "relation_to_type": "type", "validated": true, "ani": 77.5428, "matched_fragments": 229, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides islandensis", "strain": "strain=KCTC 19275", "accession": "GCA_015352455.1", "taxid": 433663, "species_taxid": 433663, "relation_to_type": "type", "validated": true, "ani": 77.5199, "matched_fragments": 232, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides donggukensis", "strain": "strain=MJB4", "accession": "GCA_014842875.1", "taxid": 2774019, "species_taxid": 2774019, "relation_to_type": "type", "validated": true, "ani": 77.489, "matched_fragments": 216, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panaciterrulae", "strain": "strain=DSM 21350", "accession": "GCA_013409645.1", "taxid": 661492, "species_taxid": 661492, "relation_to_type": "type", "validated": true, "ani": 77.4846, "matched_fragments": 248, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola scoriae", "strain": "strain=DSM 22127", "accession": "GCA_900104965.1", "taxid": 642780, "species_taxid": 642780, "relation_to_type": "type", "validated": true, "ani": 77.4666, "matched_fragments": 238, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 77.4531, "matched_fragments": 222, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides massiliensis", "strain": "strain=GD13", "accession": "GCA_900067705.2", "taxid": 1325935, "species_taxid": 1325935, "relation_to_type": "type", "validated": true, "ani": 77.4528, "matched_fragments": 166, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=SC8A-24", "accession": "GCA_014266025.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.4491, "matched_fragments": 199, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ganghwensis", "strain": "strain=9920", "accession": "GCA_014779655.1", "taxid": 252230, "species_taxid": 252230, "relation_to_type": "type", "validated": true, "ani": 77.4316, "matched_fragments": 207, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides agariphilus", "strain": "strain=KCTC 19276", "accession": "GCA_015352445.1", "taxid": 433664, "species_taxid": 433664, "relation_to_type": "type", "validated": true, "ani": 77.4258, "matched_fragments": 199, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luti", "strain": "strain=KIGAM211", "accession": "GCA_014212315.1", "taxid": 2761101, "species_taxid": 2761101, "relation_to_type": "type", "validated": true, "ani": 77.4222, "matched_fragments": 248, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dongkuii", "strain": "strain=S-713", "accession": "GCA_014127485.1", "taxid": 2760089, "species_taxid": 2760089, "relation_to_type": "type", "validated": true, "ani": 77.4196, "matched_fragments": 222, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides lacusdianchii", "strain": "strain=JXJ CY 38", "accession": "GCA_020102855.1", "taxid": 2783664, "species_taxid": 2783664, "relation_to_type": "type", "validated": true, "ani": 77.3945, "matched_fragments": 199, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides ferulae", "strain": "strain=SZ4R5S7", "accession": "GCA_003660455.1", "taxid": 2340821, "species_taxid": 2340821, "relation_to_type": "type", "validated": true, "ani": 77.374, "matched_fragments": 228, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides deserti", "strain": "strain=CGMCC 4.7183", "accession": "GCA_014646035.1", "taxid": 1588644, "species_taxid": 1588644, "relation_to_type": "type", "validated": true, "ani": 77.371, "matched_fragments": 211, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides flavescens", "strain": "strain=YIM 123512", "accession": "GCA_009823805.1", "taxid": 2691959, "species_taxid": 2691959, "relation_to_type": "type", "validated": true, "ani": 77.3404, "matched_fragments": 246, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides hwasunensis", "strain": "strain=19197", "accession": "GCA_014779665.1", "taxid": 397258, "species_taxid": 397258, "relation_to_type": "type", "validated": true, "ani": 77.3357, "matched_fragments": 208, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides sediminis", "strain": "strain=KCTC 19271", "accession": "GCA_003047295.1", "taxid": 433648, "species_taxid": 433648, "relation_to_type": "type", "validated": true, "ani": 77.3082, "matched_fragments": 218, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides psychrotolerans", "strain": "strain=CGMCC 1.11156", "accession": "GCA_900113685.1", "taxid": 1005945, "species_taxid": 1005945, "relation_to_type": "type", "validated": true, "ani": 77.2471, "matched_fragments": 202, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides psychrotolerans", "strain": "strain=NBRC 108563", "accession": "GCA_007992415.1", "taxid": 1005945, "species_taxid": 1005945, "relation_to_type": "type", "validated": true, "ani": 77.1917, "matched_fragments": 204, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marmoricola ginsengisoli", "strain": "strain=Gsoil 097", "accession": "GCA_003725695.1", "taxid": 661483, "species_taxid": 661483, "relation_to_type": "type", "validated": true, "ani": 77.1817, "matched_fragments": 194, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella jiaozuonensis", "strain": "strain=NEAU-THZ27", "accession": "GCA_005233875.1", "taxid": 2575441, "species_taxid": 2575441, "relation_to_type": "type", "validated": true, "ani": 77.1755, "matched_fragments": 204, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides terrae", "strain": "strain=CGMCC 1.7056", "accession": "GCA_900112345.1", "taxid": 574651, "species_taxid": 574651, "relation_to_type": "type", "validated": true, "ani": 77.1162, "matched_fragments": 196, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides dokdonensis", "strain": "strain=FR1436", "accession": "GCA_001653335.1", "taxid": 450734, "species_taxid": 450734, "relation_to_type": "type", "validated": true, "ani": 77.0715, "matched_fragments": 218, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides luteus", "strain": "strain=JCM 3358", "accession": "GCA_014648595.1", "taxid": 1844, "species_taxid": 1844, "relation_to_type": "type", "validated": true, "ani": 76.9936, "matched_fragments": 176, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella amoyensis", "strain": "strain=DSM 24683", "accession": "GCA_007828865.1", "taxid": 996641, "species_taxid": 996641, "relation_to_type": "type", "validated": true, "ani": 76.9388, "matched_fragments": 214, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella solani", "strain": "strain=DSM 17294", "accession": "GCA_014205295.1", "taxid": 236067, "species_taxid": 236067, "relation_to_type": "type", "validated": true, "ani": 76.8942, "matched_fragments": 170, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella pittospori", "strain": "strain=NRRL B-24813", "accession": "GCA_004331465.1", "taxid": 722689, "species_taxid": 722689, "relation_to_type": "type", "validated": true, "ani": 76.8356, "matched_fragments": 212, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kribbella soli", "strain": "strain=KCTC 29219", "accession": "GCA_004331345.1", "taxid": 1124743, "species_taxid": 1124743, "relation_to_type": "type", "validated": true, "ani": 76.757, "matched_fragments": 207, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces catenulae", "strain": "strain=NRRL B-2342", "accession": "GCA_000718015.1", "taxid": 66875, "species_taxid": 66875, "relation_to_type": "type", "validated": true, "ani": 76.262, "matched_fragments": 150, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tardus", "strain": "strain=P38-E01", "accession": "GCA_018101125.2", "taxid": 2780544, "species_taxid": 2780544, "relation_to_type": "type", "validated": true, "ani": 76.2103, "matched_fragments": 107, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lonarensis", "strain": "strain=NCL716", "accession": "GCA_012033735.1", "taxid": 700599, "species_taxid": 700599, "relation_to_type": "type", "validated": true, "ani": 75.9989, "matched_fragments": 128, "total_fragments": 753, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013697905.1", "gtdb_species": "s__JACDHG01 sp013697905", "ani": 99.9999, "matched_fragments": 739, "total_fragments": 753, "gtdb_taxonomy": 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