{ "type": "genome", "identifier": "GCA_013697965.1", "organism": "Chloroflexota bacterium", "title": "Chloroflexota bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013697965.1", "bioproject": "PRJNA630822", "biosample": "SAMN15052019", "wgs_master": "JACCVW000000000.1", "refseq_category": "na", "taxid": "2026724", "species_taxid": "2026724", "organism_name": "Chloroflexota bacterium", "infraspecific_name": "", "isolate": "MGR_bin136", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/26", "asm_name": "ASM1369796v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/697/965/GCA_013697965.1_ASM1369796v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-26", "dateModified": "2020-07-26", "datePublished": "2020-07-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Chloroflexota bacterium" ], "sample_taxid": [ "2026724" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 86.11, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2040156", "Number of Sequences": "452", "Longest Sequences (bp)": "20472", "N50 (bp)": "4931", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "1543", "Average Protein Length": "303.0", "Coding Ratio (%)": "68.7", "Number of rRNAs": "1", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Conexibacter woesei", "strain": "strain=DSM 14684", "accession": "GCA_000025265.1", "taxid": 191495, "species_taxid": 191495, "relation_to_type": "type", "validated": true, "ani": 74.8198, "matched_fragments": 56, "total_fragments": 445, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solirubrobacter pauli", "strain": "strain=DSM 14954", "accession": "GCA_003633755.1", "taxid": 166793, "species_taxid": 166793, "relation_to_type": "type", "validated": true, "ani": 74.7735, "matched_fragments": 55, "total_fragments": 445, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 86.11, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_013698385.1", "gtdb_species": "s__SPCO01 sp013698385", "ani": 79.6524, "matched_fragments": 183, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__SPCO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016200745.1", "gtdb_species": "s__SPCO01 sp016200745", "ani": 78.6768, "matched_fragments": 154, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__SPCO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013698095.1", "gtdb_species": "s__CF-46 sp013698095", "ani": 78.6303, "matched_fragments": 189, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CF-46", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003250155.1", "gtdb_species": "s__UBA5189 sp003250155", "ani": 78.5562, "matched_fragments": 104, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.47", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_013695255.1", "gtdb_species": "s__JACDAV01 sp013695255", "ani": 78.504, "matched_fragments": 133, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__JACDAV01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004297395.1", "gtdb_species": "s__UBA5189 sp004297395", "ani": 78.4366, "matched_fragments": 155, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005889475.1", "gtdb_species": "s__UBA5189 sp005889475", "ani": 78.3686, "matched_fragments": 135, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004298915.1", "gtdb_species": "s__UBA5189 sp004298915", "ani": 78.3132, "matched_fragments": 96, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017881915.1", "gtdb_species": "s__Palsa-1033 sp017881915", "ani": 78.2952, "matched_fragments": 143, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__Palsa-1033", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003169655.1", "gtdb_species": "s__Palsa-1033 sp003169655", "ani": 78.1942, "matched_fragments": 155, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__Palsa-1033", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016191345.1", "gtdb_species": "s__UBA5189 sp016191345", "ani": 78.1798, "matched_fragments": 153, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001795245.1", "gtdb_species": "s__UBA5189 sp001795245", "ani": 78.0858, "matched_fragments": 153, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016200665.1", "gtdb_species": "s__UBA5189 sp016200665", "ani": 77.9845, "matched_fragments": 135, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016200675.1", "gtdb_species": "s__UBA5189 sp016200675", "ani": 77.8337, "matched_fragments": 136, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__UBA5189", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005881055.1", "gtdb_species": "s__C-114 sp005881055", "ani": 77.8176, "matched_fragments": 105, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__C-114", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015478725.1", "gtdb_species": "s__C-114 sp015478725", "ani": 77.7806, "matched_fragments": 142, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__C-114", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903822495.1", "gtdb_species": "s__CAIJPD01 sp903822495", "ani": 77.6619, "matched_fragments": 119, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__CAIJPD01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003152165.1", "gtdb_species": "s__Palsa-1033 sp003152165", "ani": 77.5532, "matched_fragments": 139, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__Palsa-1033", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013694835.1", "gtdb_species": "s__JACDBP01 sp013694835", "ani": 77.3096, "matched_fragments": 59, "total_fragments": 445, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Limnocylindria;o__Limnocylindrales;f__CSP1-4;g__JACDBP01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__Limnocylindrales", "f__CSP1-4", "g__SPCO01", "s__" ], "_genome_taxon": [ "Chloroflexota", "bacterium", "d__Bacteria", "p__Chloroflexota", "c__Limnocylindria", "o__Limnocylindrales", "f__CSP1-4", "g__SPCO01", "s__", "Bacteria", "Chloroflexota", "Limnocylindria", "Limnocylindrales", "CSP1-4", "SPCO01", "s", "", "" ], "_meo": [ { "id": "MEO_0000007", "label": "soil" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }