{ "type": "genome", "identifier": "GCA_013811665.1", "organism": "Acidimicrobiia bacterium", "title": "Acidimicrobiia bacterium", "description": "derived from metagenome; fragmented assembly; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Monash University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013811665.1", "bioproject": "PRJNA630822", "biosample": "SAMN15051990", "wgs_master": "JACCUT000000000.1", "refseq_category": "na", "taxid": "2080302", "species_taxid": "2080302", "organism_name": "Acidimicrobiia bacterium", "infraspecific_name": "", "isolate": "MGR_bin107", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/28", "asm_name": "ASM1381166v1", "submitter": "Monash University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/811/665/GCA_013811665.1_ASM1381166v1", "excluded_from_refseq": "derived from metagenome; fragmented assembly; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-28", "dateModified": "2020-07-28", "datePublished": "2020-07-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidimicrobiia bacterium" ], "sample_taxid": [ "2080302" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: Mackay Glacier regions" ], "sample_host_location_id": [], "data_size": "0.704 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 76.15, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2555619", "Number of Sequences": "730", "Longest Sequences (bp)": "12889", "N50 (bp)": "3648", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "1901", "Average Protein Length": "278.1", "Coding Ratio (%)": "62.1", "Number of rRNAs": "0", "Number of tRNAs": "17", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhabdothermincola salaria", "strain": "strain=EGI L10124", "accession": "GCA_021246445.1", "taxid": 2903142, "species_taxid": 2903142, "relation_to_type": "type", "validated": true, "ani": 77.6969, "matched_fragments": 127, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomarinicola tropica", "strain": "strain=SCSIO 58843", "accession": "GCA_009650215.1", "taxid": 2789776, "species_taxid": 2789776, "relation_to_type": "type", "validated": true, "ani": 77.1986, "matched_fragments": 126, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdothermincola sediminis", "strain": "strain=SYSU G02662", "accession": "GCA_014805525.1", "taxid": 2751370, "species_taxid": 2751370, "relation_to_type": "type", "validated": true, "ani": 76.9006, "matched_fragments": 95, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desertimonas flava", "strain": "strain=SYSU D60003", "accession": "GCA_003426815.1", "taxid": 2064846, "species_taxid": 2064846, "relation_to_type": "type", "validated": true, "ani": 76.1567, "matched_fragments": 91, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter fluminis", "strain": "strain=DSM 18936", "accession": "GCA_004364865.1", "taxid": 467091, "species_taxid": 467091, "relation_to_type": "type", "validated": true, "ani": 76.1377, "matched_fragments": 74, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ilumatobacter coccineus", "strain": "strain=YM16-304", "accession": "GCA_000348785.1", "taxid": 467094, "species_taxid": 467094, "relation_to_type": "type", "validated": true, "ani": 75.7628, "matched_fragments": 50, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora peucetia", "strain": "strain=DSM 43363", "accession": "GCA_900091625.1", "taxid": 47871, "species_taxid": 47871, "relation_to_type": "type", "validated": true, "ani": 75.3817, "matched_fragments": 55, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tendae", "strain": "strain=JCM 4610", "accession": "GCA_014650435.1", "taxid": 1932, "species_taxid": 1932, "relation_to_type": "type", "validated": true, "ani": 75.2684, "matched_fragments": 52, "total_fragments": 432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces vietnamensis", "strain": "strain=GIM4.0001", "accession": "GCA_000830005.1", 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