{
    "type": "genome",
    "identifier": "GCA_013820875.1",
    "organism": "Verrucomicrobiota bacterium",
    "title": "Verrucomicrobiota bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013820875.1",
        "bioproject": "PRJNA630822",
        "biosample": "SAMN15052335",
        "wgs_master": "JACDHS000000000.1",
        "refseq_category": "na",
        "taxid": "2026799",
        "species_taxid": "2026799",
        "organism_name": "Verrucomicrobiota bacterium",
        "infraspecific_name": "",
        "isolate": "MGR_bin444",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/28",
        "asm_name": "ASM1382087v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/820/875/GCA_013820875.1_ASM1382087v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-28",
    "dateModified": "2020-07-28",
    "datePublished": "2020-07-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Verrucomicrobiota bacterium"
        ],
        "sample_taxid": [
            "2026799"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica: Mackay Glacier regions, Flatiron"
        ],
        "sample_host_location_id": [],
        "data_size": "1.633 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5697622",
        "Number of Sequences": "239",
        "Longest Sequences (bp)": "158285",
        "N50 (bp)": "31796",
        "Gap Ratio (%)": "0.002282",
        "GCcontent (%)": "52.7",
        "Number of CDSs": "4368",
        "Average Protein Length": "360.8",
        "Coding Ratio (%)": "83.0",
        "Number of rRNAs": "0",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013820875.1",
                "gtdb_species": "s__JACDHS01 sp013820875",
                "ani": 100.0,
                "matched_fragments": 1763,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__JACDHS01;g__JACDHS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_903820285.1",
                "gtdb_species": "s__UBA11358 sp903820285",
                "ani": 75.9445,
                "matched_fragments": 57,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.53",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000172555.1",
                "gtdb_species": "s__Pedosphaera parvula",
                "ani": 75.8755,
                "matched_fragments": 66,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__Pedosphaeraceae;g__Pedosphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903865745.1",
                "gtdb_species": "s__UBA11358 sp903865745",
                "ani": 75.844,
                "matched_fragments": 53,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_903944085.1",
                "gtdb_species": "s__UBA11358 sp903944085",
                "ani": 75.7485,
                "matched_fragments": 88,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_016195385.1",
                "gtdb_species": "s__JACPZS01 sp016195385",
                "ani": 75.7428,
                "matched_fragments": 72,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__JACPZS01;g__JACPZS01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903833055.1",
                "gtdb_species": "s__UBA11358 sp903833055",
                "ani": 75.7422,
                "matched_fragments": 69,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.64",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_903911825.1",
                "gtdb_species": "s__UBA11358 sp903911825",
                "ani": 75.6735,
                "matched_fragments": 64,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.63",
                "min_intra_species_ani": "99.63",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016713365.1",
                "gtdb_species": "s__JADJPG01 sp016713365",
                "ani": 75.6037,
                "matched_fragments": 86,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__JADJPG01;g__JADJPG01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013140495.1",
                "gtdb_species": "s__SCTL01 sp013140495",
                "ani": 75.5572,
                "matched_fragments": 67,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__SCTL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903922735.1",
                "gtdb_species": "s__UBA11358 sp903922735",
                "ani": 75.547,
                "matched_fragments": 61,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__UBA11358;g__UBA11358",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016871535.1",
                "gtdb_species": "s__VHCZ01 sp016871535",
                "ani": 75.5408,
                "matched_fragments": 51,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__SIBE01;g__VHCZ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016200005.1",
                "gtdb_species": "s__PALSA-1396 sp016200005",
                "ani": 75.4853,
                "matched_fragments": 74,
                "total_fragments": 1778,
                "gtdb_taxonomy": "d__Bacteria;p__Verrucomicrobiota;c__Verrucomicrobiae;o__Pedosphaerales;f__PALSA-1396;g__PALSA-1396",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__JACDHS01",
        "g__JACDHS01",
        "s__JACDHS01 sp013820875"
    ],
    "_genome_taxon": [
        "Verrucomicrobiota",
        "bacterium",
        "d__Bacteria",
        "p__Verrucomicrobiota",
        "c__Verrucomicrobiae",
        "o__Limisphaerales",
        "f__JACDHS01",
        "g__JACDHS01",
        "s__JACDHS01 sp013820875",
        "Bacteria",
        "Verrucomicrobiota",
        "Verrucomicrobiae",
        "Limisphaerales",
        "JACDHS01",
        "JACDHS01",
        "JACDHS01",
        "sp013820875"
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}