{
    "type": "genome",
    "identifier": "GCA_013822685.1",
    "organism": "Leptothrix sp. (in: b-proteobacteria)",
    "title": "Leptothrix sp. (in: b-proteobacteria)",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Illinois at Urbana-Champaign",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013822685.1",
        "bioproject": "PRJNA323575",
        "biosample": "SAMN08286393",
        "wgs_master": "PNKV00000000.1",
        "refseq_category": "na",
        "taxid": "34030",
        "species_taxid": "34030",
        "organism_name": "Leptothrix sp. (in: b-proteobacteria)",
        "infraspecific_name": "",
        "isolate": "PB2.3.27",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/28",
        "asm_name": "ASM1382268v1",
        "submitter": "University of Illinois at Urbana-Champaign",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/822/685/GCA_013822685.1_ASM1382268v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-28",
    "dateModified": "2020-07-28",
    "datePublished": "2020-07-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Leptothrix sp. (in: b-proteobacteria)"
        ],
        "sample_taxid": [
            "34030"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Illinois, Champaign"
        ],
        "sample_host_location_id": [],
        "data_size": "1.167 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "4212677",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "458460",
        "N50 (bp)": "173220",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.3",
        "Number of CDSs": "3818",
        "Average Protein Length": "341.3",
        "Coding Ratio (%)": "92.8",
        "Number of rRNAs": "0",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aquabacterium commune",
                "strain": "strain=DSM 11901",
                "accession": "GCA_004362855.1",
                "taxid": 70586,
                "species_taxid": 70586,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5197,
                "matched_fragments": 645,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium soli",
                "strain": "strain=SJQ9",
                "accession": "GCA_003933735.1",
                "taxid": 2493092,
                "species_taxid": 2493092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4706,
                "matched_fragments": 757,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium parvum",
                "strain": "strain=B6",
                "accession": "GCA_001447195.1",
                "taxid": 70584,
                "species_taxid": 70584,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3017,
                "matched_fragments": 636,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium olei",
                "strain": "strain=NBRC 110486",
                "accession": "GCA_003100395.1",
                "taxid": 1296669,
                "species_taxid": 1296669,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8316,
                "matched_fragments": 618,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium lacunae",
                "strain": "strain=KMB7",
                "accession": "GCA_004310865.1",
                "taxid": 2528630,
                "species_taxid": 2528630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6328,
                "matched_fragments": 613,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquabacterium fontiphilum",
                "strain": "strain=CS-6",
                "accession": "GCA_009909205.1",
                "taxid": 450365,
                "species_taxid": 450365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1325,
                "matched_fragments": 560,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus hippei",
                "strain": "strain=DSM 566",
                "accession": "GCA_003201595.1",
                "taxid": 744406,
                "species_taxid": 744406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9925,
                "matched_fragments": 422,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphaerotilus montanus",
                "strain": "strain=HS",
                "accession": "GCA_013426955.1",
                "taxid": 522889,
                "species_taxid": 522889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8881,
                "matched_fragments": 376,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella dechloratans",
                "strain": "strain=CCUG 30977",
                "accession": "GCA_021049305.1",
                "taxid": 36863,
                "species_taxid": 36863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7316,
                "matched_fragments": 450,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella benzenivorans",
                "strain": "strain=B7",
                "accession": "GCA_020387415.1",
                "taxid": 2831643,
                "species_taxid": 2831643,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6504,
                "matched_fragments": 420,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Schlegelella brevitalea",
                "strain": "strain=DSM 7029",
                "accession": "GCA_001017435.1",
                "taxid": 413882,
                "species_taxid": 413882,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3283,
                "matched_fragments": 424,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ideonella livida",
                "strain": "strain=TBM-1",
                "accession": "GCA_010499455.1",
                "taxid": 2707176,
                "species_taxid": 2707176,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2245,
                "matched_fragments": 392,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas aquatica",
                "strain": "strain=NBRC 14918",
                "accession": "GCA_000739875.1",
                "taxid": 225991,
                "species_taxid": 225991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8811,
                "matched_fragments": 317,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ramlibacter monticola",
                "strain": "strain=KACC 19175",
                "accession": "GCA_016722785.1",
                "taxid": 1926872,
                "species_taxid": 1926872,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8361,
                "matched_fragments": 351,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidimonas aquatica",
                "strain": "strain=CLN-1",
                "accession": "GCA_007556585.1",
                "taxid": 247482,
                "species_taxid": 247482,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1791,
                "matched_fragments": 221,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Comamonas suwonensis",
                "strain": "strain=EJ-4",
                "accession": "GCA_012844455.2",
                "taxid": 2606214,
                "species_taxid": 2606214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0287,
                "matched_fragments": 224,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Massilia timonae",
                "strain": "strain=CCUG 45783",
                "accession": "GCA_000315425.1",
                "taxid": 47229,
                "species_taxid": 47229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9263,
                "matched_fragments": 256,
                "total_fragments": 1390,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_013822685.1",
                "gtdb_species": "s__Aquabacterium sp013822685",
                "ani": 100.0,
                "matched_fragments": 1389,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014378415.1",
                "gtdb_species": "s__Aquabacterium sp014378415",
                "ani": 87.5719,
                "matched_fragments": 907,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001770725.1",
                "gtdb_species": "s__Aquabacterium sp001770725",
                "ani": 81.6128,
                "matched_fragments": 682,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003933735.1",
                "gtdb_species": "s__Aquabacterium sp003933735",
                "ani": 81.4573,
                "matched_fragments": 759,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000768065.1",
                "gtdb_species": "s__Aquabacterium sp000768065",
                "ani": 81.4163,
                "matched_fragments": 736,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_005502875.1",
                "gtdb_species": "s__Aquabacterium sp005502875",
                "ani": 81.3866,
                "matched_fragments": 635,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001447195.1",
                "gtdb_species": "s__Aquabacterium parvum",
                "ani": 81.2805,
                "matched_fragments": 638,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.21",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_019112875.1",
                "gtdb_species": "s__Aquabacterium excrementipullorum",
                "ani": 81.2719,
                "matched_fragments": 721,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016195855.1",
                "gtdb_species": "s__Aquabacterium sp016195855",
                "ani": 80.9998,
                "matched_fragments": 708,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001770775.1",
                "gtdb_species": "s__Aquabacterium sp001770775",
                "ani": 80.9941,
                "matched_fragments": 537,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016000265.1",
                "gtdb_species": "s__Aquabacterium sp016000265",
                "ani": 80.9656,
                "matched_fragments": 610,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003963115.1",
                "gtdb_species": "s__Aquabacterium sp003963115",
                "ani": 80.757,
                "matched_fragments": 693,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004310865.1",
                "gtdb_species": "s__Aquabacterium lacunae",
                "ani": 80.6522,
                "matched_fragments": 611,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016185075.1",
                "gtdb_species": "s__Aquabacterium sp016185075",
                "ani": 80.6198,
                "matched_fragments": 476,
                "total_fragments": 1390,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Aquabacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 24.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 4909402.4,
        "gc_content": 68.9,
        "coding_genes": 4300.667,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 50.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 1.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Aquabacterium",
        "s__Aquabacterium sp013822685"
    ],
    "_genome_taxon": [
        "Leptothrix",
        "sp.",
        "(in:",
        "b-proteobacteria)",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Burkholderiales",
        "f__Burkholderiaceae",
        "g__Aquabacterium",
        "s__Aquabacterium sp013822685",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Burkholderiales",
        "Burkholderiaceae",
        "Aquabacterium",
        "Aquabacterium",
        "sp013822685"
    ],
    "_meo": [
        {
            "id": "MEO_0000907",
            "label": "drinking water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}