{
    "type": "genome",
    "identifier": "GCA_013911255.1",
    "organism": "Pseudomonas sp.",
    "title": "Pseudomonas sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Evolutionary Genomics Group",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_013911255.1",
        "bioproject": "PRJNA638822",
        "biosample": "SAMN15215264",
        "wgs_master": "JACETQ000000000.1",
        "refseq_category": "na",
        "taxid": "306",
        "species_taxid": "306",
        "organism_name": "Pseudomonas sp.",
        "infraspecific_name": "",
        "isolate": "MCMED-G46",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/07/29",
        "asm_name": "ASM1391125v1",
        "submitter": "Evolutionary Genomics Group",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/911/255/GCA_013911255.1_ASM1391125v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-07-29",
    "dateModified": "2020-07-29",
    "datePublished": "2020-07-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas sp."
        ],
        "sample_taxid": [
            "306"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain:Coast of Alicante, Western Mediterranean Sea, close to the coast of Guardamar del Segura"
        ],
        "sample_host_location_id": [],
        "data_size": "0.632 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 37.5,
        "contamination": 0.52,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2245549",
        "Number of Sequences": "271",
        "Longest Sequences (bp)": "24448",
        "N50 (bp)": "7900",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.9",
        "Number of CDSs": "1891",
        "Average Protein Length": "298.9",
        "Coding Ratio (%)": "75.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "15",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Pseudomonas chengduensis",
                "strain": "strain=DSM 26382",
                "accession": "GCA_900102635.1",
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                "species_taxid": 489632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.6817,
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                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas chengduensis",
                "strain": "strain=MBR",
                "accession": "GCA_017905455.1",
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                "species_taxid": 489632,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.6667,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas chengduensis",
                "strain": "strain=DSM 26382",
                "accession": "GCA_012986985.1",
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                "species_taxid": 489632,
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                "ani": 96.6361,
                "matched_fragments": 494,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas sihuiensis",
                "strain": "strain=KCTC 32246",
                "accession": "GCA_900106015.1",
                "taxid": 1274359,
                "species_taxid": 1274359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.5967,
                "matched_fragments": 484,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pseudomonas toyotomiensis",
                "strain": "strain=DSM 26169",
                "accession": "GCA_002741095.1",
                "taxid": 554344,
                "species_taxid": 554344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8502,
                "matched_fragments": 513,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas toyotomiensis",
                "strain": "strain=JCM 15604",
                "accession": "GCA_900115695.1",
                "taxid": 554344,
                "species_taxid": 554344,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.8433,
                "matched_fragments": 512,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas oleovorans subsp. oleovorans",
                "strain": "strain=NBRC 13583",
                "accession": "GCA_002091815.1",
                "taxid": 1218129,
                "species_taxid": 301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9726,
                "matched_fragments": 415,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas oleovorans subsp. oleovorans",
                "strain": "strain=DSM 1045",
                "accession": "GCA_002197815.1",
                "taxid": 1218129,
                "species_taxid": 301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9154,
                "matched_fragments": 418,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas oleovorans",
                "strain": "strain=NCTC10692",
                "accession": "GCA_900455615.1",
                "taxid": 301,
                "species_taxid": 301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8653,
                "matched_fragments": 422,
                "total_fragments": 610,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 37.5,
            "contamination": 0.52,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900102635.1",
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                "ani": 96.6365,
                "matched_fragments": 490,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 96.7402,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_015712065.1",
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                "matched_fragments": 514,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 96.7107,
                "mean_intra_species_ani": "97.25",
                "min_intra_species_ani": "97.17",
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                "num_clustered_genomes": 9,
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            },
            {
                "accession": "GCF_900106015.1",
                "gtdb_species": "s__Pseudomonas_E sihuiensis",
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                "matched_fragments": 484,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 96.7402,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002803095.1",
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                "matched_fragments": 488,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.6432,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001941865.1",
                "gtdb_species": "s__Pseudomonas_E alcaliphila_B",
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                "matched_fragments": 489,
                "total_fragments": 610,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.7502,
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                "num_clustered_genomes": 3,
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            },
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                "accession": "GCF_900115695.1",
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                "total_fragments": 610,
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                "num_clustered_genomes": 7,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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            },
            {
                "accession": "GCF_002741105.1",
                "gtdb_species": "s__Pseudomonas_E sediminis",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
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                "mean_intra_species_ani": "96.01",
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                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.248,
        "cell_length": 0.186,
        "doubling_h": -0.025,
        "growth_tmp": 28.767,
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        "rRNA16S_genes": 5.319,
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        "range_salinity": 0.666,
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        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 0.926,
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        "bacillus_cell_shape": 0.988,
        "coccus_cell_shape": 0.011,
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        "coccobacillus_cell_shape": 0.0,
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        "spiral_cell_shape": 0.0
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    "_gtdb_taxon": [
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        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
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        "f__Pseudomonadaceae",
        "g__Pseudomonas_E",
        "s__Pseudomonas_E chengduensis_A"
    ],
    "_genome_taxon": [
        "Pseudomonas",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Pseudomonadaceae",
        "g__Pseudomonas_E",
        "s__Pseudomonas_E chengduensis_A",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Pseudomonadaceae",
        "Pseudomonas",
        "E",
        "Pseudomonas",
        "E",
        "chengduensis",
        "A"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}