{ "type": "genome", "identifier": "GCA_013912065.1", "organism": "Brevundimonas sp.", "title": "Brevundimonas sp.", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Evolutionary Genomics Group", "publication": [ {} ], "properties": { "assembly_accession": "GCA_013912065.1", "bioproject": "PRJNA638822", "biosample": "SAMN15215222", "wgs_master": "JACESA000000000.1", "refseq_category": "na", "taxid": "1871086", "species_taxid": "1871086", "organism_name": "Brevundimonas sp.", "infraspecific_name": "", "isolate": "MCMED-G04", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/29", "asm_name": "ASM1391206v1", "submitter": "Evolutionary Genomics Group", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/912/065/GCA_013912065.1_ASM1391206v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-29", "dateModified": "2020-07-29", "datePublished": "2020-07-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas sp." ], "sample_taxid": [ "1871086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:Coast of Alicante, Western Mediterranean Sea, close to the coast of Guardamar del Segura" ], "sample_host_location_id": [], "data_size": "0.969 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3537598", "Number of Sequences": "45", "Longest Sequences (bp)": "385533", "N50 (bp)": "162176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.1", "Number of CDSs": "3388", "Average Protein Length": "313.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 88.4013, "matched_fragments": 842, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 87.1358, "matched_fragments": 823, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vesicularis", "strain": "strain=NBRC 12165", "accession": "GCA_001592205.1", "taxid": 41276, "species_taxid": 41276, "relation_to_type": "suspected-type", "validated": true, "ani": 85.837, "matched_fragments": 775, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 85.7753, "matched_fragments": 745, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 85.0569, "matched_fragments": 768, "total_fragments": 1156, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", 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