{
    "type": "genome",
    "identifier": "GCA_014381295.1",
    "organism": "Synechococcus sp.",
    "title": "Synechococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Utrecht University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_014381295.1",
        "bioproject": "PRJNA649215",
        "biosample": "SAMN15784343",
        "wgs_master": "JACNLY000000000.1",
        "refseq_category": "na",
        "taxid": "1131",
        "species_taxid": "1131",
        "organism_name": "Synechococcus sp.",
        "infraspecific_name": "",
        "isolate": "NIOZ-UU94",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/01",
        "asm_name": "ASM1438129v1",
        "submitter": "Utrecht University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/381/295/GCA_014381295.1_ASM1438129v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-01",
    "dateModified": "2020-09-01",
    "datePublished": "2020-09-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Synechococcus sp."
        ],
        "sample_taxid": [
            "1131"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "0.502 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": 80.0,
            "max": 80.0
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1749939",
        "Number of Sequences": "157",
        "Longest Sequences (bp)": "65881",
        "N50 (bp)": "15722",
        "Gap Ratio (%)": "0.367327",
        "GCcontent (%)": "55.3",
        "Number of CDSs": "1682",
        "Average Protein Length": "278.7",
        "Coding Ratio (%)": "80.4",
        "Number of rRNAs": "0",
        "Number of tRNAs": "34",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Parasynechococcus marenigrum",
                "strain": "strain=WH 8102",
                "accession": "GCA_000195975.1",
                "taxid": 2881428,
                "species_taxid": 2881428,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1724,
                "matched_fragments": 104,
                "total_fragments": 501,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014279775.1",
                "gtdb_species": "s__Synechococcus_C sp002500205",
                "ani": 98.7825,
                "matched_fragments": 479,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014279835.1",
                "gtdb_species": "s__Synechococcus_C sp014279835",
                "ani": 91.6304,
                "matched_fragments": 485,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.93",
                "min_intra_species_ani": "96.36",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000014585.1",
                "gtdb_species": "s__Synechococcus_C sp000014585",
                "ani": 88.8002,
                "matched_fragments": 467,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001040845.1",
                "gtdb_species": "s__Synechococcus_C sp001040845",
                "ani": 88.5464,
                "matched_fragments": 469,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003210315.1",
                "gtdb_species": "s__Synechococcus_C sp003210315",
                "ani": 88.2176,
                "matched_fragments": 292,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.13",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.52",
                "min_intra_species_af": "0.52",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000230675.1",
                "gtdb_species": "s__Synechococcus_C sp000230675",
                "ani": 88.1903,
                "matched_fragments": 473,
                "total_fragments": 501,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__PCC-6307;f__Cyanobiaceae;g__Synechococcus_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.29",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_C",
        "s__Synechococcus_C sp002500205"
    ],
    "_genome_taxon": [
        "Synechococcus",
        "sp.",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__PCC-6307",
        "f__Cyanobiaceae",
        "g__Synechococcus_C",
        "s__Synechococcus_C sp002500205",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "PCC-6307",
        "Cyanobiaceae",
        "Synechococcus",
        "C",
        "Synechococcus",
        "C",
        "sp002500205"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}