<?xml version="1.0" ?>
<BioSampleSet><BioSample access="public" publication_date="2020-08-11T00:00:00.000" last_update="2021-02-28T10:06:35.242" submission_date="2020-08-11T08:09:10.240" id="15784285" accession="SAMN15784285">   <Ids>     <Id db="BioSample" is_primary="1">SAMN15784285</Id>     <Id db_label="Sample name">MAG_NIOZ-UU41</Id>   </Ids>   <Description>     <Title>metagenomic assembly</Title>     <Organism taxonomy_id="2099665" taxonomy_name="Ardenticatenia bacterium">       <OrganismName>Ardenticatenia bacterium</OrganismName>     </Organism>     <Comment>       <Paragraph>MAG generated with MetaBAT v0.32.4 from the cross-assembly of 15 shotgun metagenomes across the Black Sea water column. Taxonomic classification is based on Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.</Paragraph>       <Paragraph>Keywords: GSC:MIxS;MIMAG:6.0</Paragraph>     </Comment>   </Description>   <Owner>     <Name url="https://www.uu.nl/en/research/science-for-life">Utrecht University</Name>     <Contacts>       <Contact email="bastiaanvonmeijenfeldt@gmail.com">         <Name>           <First>F. A. Bastiaan</First>           <Last>von Meijenfeldt</Last>         </Name>       </Contact>     </Contacts>   </Owner>   <Models>     <Model>MIMAG.water</Model>   </Models>   <Package display_name="MIMAG: metagenome-assembled genome, water; version 6.0">MIMAG.water.6.0</Package>   <Attributes>     <Attribute attribute_name="collection_date" harmonized_name="collection_date" display_name="collection date">2013-06-09/2013-06-10</Attribute>     <Attribute attribute_name="depth" harmonized_name="depth" display_name="depth">50-2000 m</Attribute>     <Attribute attribute_name="env_broad_scale" harmonized_name="env_broad_scale" display_name="broad-scale environmental context">marine</Attribute>     <Attribute attribute_name="env_local_scale" harmonized_name="env_local_scale" display_name="local-scale environmental context">Black Sea</Attribute>     <Attribute attribute_name="env_medium" harmonized_name="env_medium" display_name="environmental medium">saline water</Attribute>     <Attribute attribute_name="geo_loc_name" harmonized_name="geo_loc_name" display_name="geographic location">not applicable</Attribute>     <Attribute attribute_name="lat_lon" harmonized_name="lat_lon" display_name="latitude and longitude">42.896667 N 30.678333 E</Attribute>     <Attribute attribute_name="samp_collect_device" harmonized_name="samp_collect_device" display_name="sample collection device or method">McLane WTS_LV in situ pumps, pre-combusted glass fiber filters with 142 mm diameter and 0.7 um pore size</Attribute>     <Attribute attribute_name="samp_store_temp" harmonized_name="samp_store_temp" display_name="sample storage temperature">-80 degrees C</Attribute>     <Attribute attribute_name="size_frac" harmonized_name="size_frac" display_name="size fraction selected">&gt; 0.7 um</Attribute>     <Attribute attribute_name="tot_depth_water_col" harmonized_name="tot_depth_water_col" display_name="total depth of water column">2107 m</Attribute>     <Attribute attribute_name="isolation_source" harmonized_name="isolation_source" display_name="isolation source">Suspended Particulate Matter (SPM) from the Black Sea western gyre</Attribute>     <Attribute attribute_name="derived_from" harmonized_name="derived_from" display_name="derived from">This BioSample is a metagenomic assembly obtained from the 15 individual BioSamples: SAMN15667690, SAMN15667691, SAMN15667692, SAMN15667693, SAMN15667694, SAMN15667695, SAMN15667696, SAMN15667697, SAMN15667698, SAMN15667699, SAMN15667700, SAMN15667701, SAMN15667702, SAMN15667703, SAMN15667704.</Attribute>     <Attribute attribute_name="isolate" harmonized_name="isolate" display_name="isolate">NIOZ-UU41</Attribute>     <Attribute attribute_name="analysis_project_type">MAG</Attribute>     <Attribute attribute_name="assembly_software">metaSPAdes v3.8.0</Attribute>     <Attribute attribute_name="taxonomic_classification_software">Bin Annotation Tool (BAT) v5.1.2 with reference databases dated 2020-07-22.</Attribute>     <Attribute attribute_name="CheckM_marker_lineage">k__Bacteria (UID1452)</Attribute>     <Attribute attribute_name="completeness">57.18</Attribute>     <Attribute attribute_name="contamination">5.45</Attribute>     <Attribute attribute_name="strain_heterogeneity">0.00</Attribute>     <Attribute attribute_name="assembly_quality">Medium Quality Draft</Attribute>     <Attribute attribute_name="genome_size_(bp)">3341559</Attribute>     <Attribute attribute_name="#_scaffolds">866</Attribute>     <Attribute attribute_name="#_contigs">890</Attribute>     <Attribute attribute_name="N50_(scaffolds)">3790</Attribute>     <Attribute attribute_name="N50_(contigs)">3724</Attribute>     <Attribute attribute_name="mean_scaffold_length_(bp)">3858</Attribute>     <Attribute attribute_name="mean_contig_length_(bp)">3749</Attribute>     <Attribute attribute_name="longest_scaffold_(bp)">12499</Attribute>     <Attribute attribute_name="longest_contig_(bp)">12499</Attribute>     <Attribute attribute_name="GC">59.9</Attribute>     <Attribute attribute_name="GC_std_(scaffolds_&gt;_1kbp)">2.23</Attribute>     <Attribute attribute_name="completeness_software">CheckM v1.0.7 in lineage specific workflow</Attribute>     <Attribute attribute_name="completeness_approach">marker gene based</Attribute>     <Attribute attribute_name="bin_parameters">kmer+coverage</Attribute>     <Attribute attribute_name="binning_software">MetaBAT v0.32.4</Attribute>     <Attribute attribute_name="reassembly_post_binning">no</Attribute>     <Attribute attribute_name="MAG_coverage_software">BWA-MEM v0.7.12-r1039</Attribute>     <Attribute attribute_name="metagenomic">1</Attribute>     <Attribute attribute_name="environmental-sample">1</Attribute>     <Attribute attribute_name="sample-type" harmonized_name="sample_type" display_name="sample type">metagenomic assembly</Attribute>     <Attribute attribute_name="metagenome-source">marine metagenome</Attribute>   </Attributes>   <Links>     <Link type="entrez" target="bioproject" label="PRJNA649215">649215</Link>   </Links>   <Status status="live" when="2020-08-11T08:09:10.243"/> </BioSample> </BioSampleSet>
