{
    "type": "genome",
    "identifier": "GCA_014533905.1",
    "organism": "Microcoleus sp. T3-bin5",
    "title": "Microcoleus sp. T3-bin5",
    "description": "contaminated; derived from metagenome; fragmented assembly",
    "data type": "Genome sequencing and assembly",
    "organization": "Monash University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_014533905.1",
        "bioproject": "PRJNA647683",
        "biosample": "SAMN15929763",
        "wgs_master": "JACVSO000000000.1",
        "refseq_category": "na",
        "taxid": "2769072",
        "species_taxid": "2769072",
        "organism_name": "Microcoleus sp. T3-bin5",
        "infraspecific_name": "",
        "isolate": "T3-bin5",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/14",
        "asm_name": "ASM1453390v1",
        "submitter": "Monash University",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/533/905/GCA_014533905.1_ASM1453390v1",
        "excluded_from_refseq": "contaminated; derived from metagenome; fragmented assembly",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-14",
    "dateModified": "2020-09-14",
    "datePublished": "2020-09-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Microcoleus sp. T3-bin5"
        ],
        "sample_taxid": [
            "2769072"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Roxby Downs"
        ],
        "sample_host_location_id": [],
        "data_size": "1.125 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 74.13,
        "contamination": 14.43,
        "strain_heterogeneity": 14.29,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3777845",
        "Number of Sequences": "2177",
        "Longest Sequences (bp)": "6982",
        "N50 (bp)": "1776",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "1758",
        "Average Protein Length": "247.9",
        "Coding Ratio (%)": "34.6",
        "Number of rRNAs": "0",
        "Number of tRNAs": "26",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 74.13,
            "contamination": 14.43,
            "strain_heterogeneity": 14.29
        },
        "gtdb_result": [
            {
                "accession": "GCF_014695295.1",
                "gtdb_species": "s__Microcoleus sp014695295",
                "ani": 94.5913,
                "matched_fragments": 141,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013179805.1",
                "gtdb_species": "s__Microcoleus asticus",
                "ani": 94.1465,
                "matched_fragments": 142,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000214075.1",
                "gtdb_species": "s__Microcoleus vaginatus",
                "ani": 93.7094,
                "matched_fragments": 138,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000317475.1",
                "gtdb_species": "s__Microcoleus sp000317475",
                "ani": 93.5322,
                "matched_fragments": 141,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014695175.1",
                "gtdb_species": "s__Microcoleus sp014695175",
                "ani": 93.0707,
                "matched_fragments": 139,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.46",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_004293365.1",
                "gtdb_species": "s__Microcoleus sp004293365",
                "ani": 89.1699,
                "matched_fragments": 137,
                "total_fragments": 148,
                "gtdb_taxonomy": "d__Bacteria;p__Cyanobacteria;c__Cyanobacteriia;o__Cyanobacteriales;f__Microcoleaceae;g__Microcoleus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 22.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 6646136.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Microcoleus",
        "s__"
    ],
    "_genome_taxon": [
        "Microcoleus",
        "sp.",
        "T3-bin5",
        "d__Bacteria",
        "p__Cyanobacteriota",
        "c__Cyanobacteriia",
        "o__Cyanobacteriales",
        "f__Microcoleaceae",
        "g__Microcoleus",
        "s__",
        "Bacteria",
        "Cyanobacteriota",
        "Cyanobacteriia",
        "Cyanobacteriales",
        "Microcoleaceae",
        "Microcoleus",
        "s",
        "",
        ""
    ],
    "_meo": [
        {
            "id": "MEO_0000007",
            "label": "soil"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}