{
    "type": "genome",
    "identifier": "GCA_014802425.1",
    "organism": "Bacteroides sp.",
    "title": "Bacteroides sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Jyvaskyla",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_014802425.1",
        "bioproject": "PRJNA613381",
        "biosample": "SAMN14407163",
        "wgs_master": "JAAVCH000000000.1",
        "refseq_category": "na",
        "taxid": "29523",
        "species_taxid": "29523",
        "organism_name": "Bacteroides sp.",
        "infraspecific_name": "",
        "isolate": "Mgla_MAG_10-bin_20",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/09/29",
        "asm_name": "ASM1480242v1",
        "submitter": "University of Jyvaskyla",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/802/425/GCA_014802425.1_ASM1480242v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-09-29",
    "dateModified": "2020-09-29",
    "datePublished": "2020-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bacteroides sp."
        ],
        "sample_taxid": [
            "29523"
        ],
        "sample_host_organism": [
            "Myodes glareolus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Ukraine"
        ],
        "sample_host_location_id": [],
        "data_size": "0.797 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2787235",
        "Number of Sequences": "48",
        "Longest Sequences (bp)": "213983",
        "N50 (bp)": "107561",
        "Gap Ratio (%)": "0.066302",
        "GCcontent (%)": "56.6",
        "Number of CDSs": "2235",
        "Average Protein Length": "361.4",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paramuribaculum intestinale",
                "strain": "strain=DSM 100749",
                "accession": "GCA_003024925.1",
                "taxid": 2094151,
                "species_taxid": 2094151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3527,
                "matched_fragments": 75,
                "total_fragments": 903,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Duncaniella muris",
                "strain": "strain=DSM 103720",
                "accession": "GCA_003024805.1",
                "taxid": 2094150,
                "species_taxid": 2094150,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0315,
                "matched_fragments": 89,
                "total_fragments": 903,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sodaliphilus pleomorphus",
                "strain": "strain=Oil-RF-744-WCA-WT-10",
                "accession": "GCA_009696565.1",
                "taxid": 2606626,
                "species_taxid": 2606626,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3755,
                "matched_fragments": 54,
                "total_fragments": 903,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Barnesiella viscericola",
                "strain": "strain=C46, DSM 18177",
                "accession": "GCA_000512915.1",
                "taxid": 397865,
                "species_taxid": 397865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9695,
                "matched_fragments": 57,
                "total_fragments": 903,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014802425.1",
                "gtdb_species": "s__CAG-485 sp014802425",
                "ani": 100.0,
                "matched_fragments": 902,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_014801595.1",
                "gtdb_species": "s__CAG-485 sp014801595",
                "ani": 79.526,
                "matched_fragments": 178,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.47",
                "min_intra_species_ani": "97.47",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910577585.1",
                "gtdb_species": "s__CAG-485 sp910577585",
                "ani": 79.1213,
                "matched_fragments": 275,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900760885.1",
                "gtdb_species": "s__CAG-485 sp900760885",
                "ani": 78.9032,
                "matched_fragments": 159,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_014802625.1",
                "gtdb_species": "s__CAG-485 sp014802625",
                "ani": 78.732,
                "matched_fragments": 173,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900554345.1",
                "gtdb_species": "s__CAG-485 sp900554345",
                "ani": 78.478,
                "matched_fragments": 174,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.71",
                "min_intra_species_ani": "99.71",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_910584125.1",
                "gtdb_species": "s__CAG-485 sp910584125",
                "ani": 78.3843,
                "matched_fragments": 217,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002491945.1",
                "gtdb_species": "s__CAG-485 sp002491945",
                "ani": 78.128,
                "matched_fragments": 206,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.81",
                "min_intra_species_ani": "98.93",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_905214735.1",
                "gtdb_species": "s__CAG-485 sp905214735",
                "ani": 77.8394,
                "matched_fragments": 186,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_910588245.1",
                "gtdb_species": "s__CAG-485 sp910588245",
                "ani": 77.8259,
                "matched_fragments": 145,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.72",
                "min_intra_species_ani": "98.72",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002493515.1",
                "gtdb_species": "s__CAG-485 sp002493515",
                "ani": 77.7615,
                "matched_fragments": 177,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.64",
                "min_intra_species_ani": "97.64",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_014801225.1",
                "gtdb_species": "s__CAG-485 sp014801225",
                "ani": 77.5575,
                "matched_fragments": 83,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001689445.1",
                "gtdb_species": "s__M3 sp001689445",
                "ani": 77.2473,
                "matched_fragments": 87,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__M3",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002491165.1",
                "gtdb_species": "s__CAG-485 sp002491165",
                "ani": 77.1162,
                "matched_fragments": 149,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.22",
                "min_intra_species_ani": "96.16",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCA_014802175.1",
                "gtdb_species": "s__CAG-485 sp014802175",
                "ani": 77.1127,
                "matched_fragments": 63,
                "total_fragments": 903,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;g__CAG-485",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.67",
                "min_intra_species_af": "0.65",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.136,
        "cell_length": 0.217,
        "doubling_h": -0.095,
        "growth_tmp": 36.666,
        "optimum_tmp": 36.026,
        "optimum_ph": 6.997,
        "genome_size": 4818468.536,
        "gc_content": 43.414,
        "coding_genes": 3969.717,
        "rRNA16S_genes": 5.5,
        "tRNA_genes": 71.066,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Lepagella",
        "s__Lepagella sp014802425"
    ],
    "_genome_taxon": [
        "Bacteroides",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Muribaculaceae",
        "g__Lepagella",
        "s__Lepagella sp014802425",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Muribaculaceae",
        "Lepagella",
        "Lepagella",
        "sp014802425"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}