{ "type": "genome", "identifier": "GCA_014858255.1", "organism": "Cronobacter sakazakii", "title": "Cronobacter sakazakii", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "SAHMRI", "publication": [ {} ], "properties": { "assembly_accession": "GCA_014858255.1", "bioproject": "PRJNA482729", "biosample": "SAMN09694076", "wgs_master": "RKGS00000000.1", "refseq_category": "na", "taxid": "28141", "species_taxid": "28141", "organism_name": "Cronobacter sakazakii", "infraspecific_name": "", "isolate": "UBG014", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/05", "asm_name": "ASM1485825v1", "submitter": "SAHMRI", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/858/255/GCA_014858255.1_ASM1485825v1", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-05", "dateModified": "2020-10-05", "datePublished": "2020-10-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Cronobacter sakazakii" ], "sample_taxid": [ "28141" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "India: Tamil Nadu" ], "sample_host_location_id": [], "data_size": "0.609 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 25.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2141628", "Number of Sequences": "365", "Longest Sequences (bp)": "23855", "N50 (bp)": "6660", "Gap Ratio (%)": "0.000467", "GCcontent (%)": "56.9", "Number of CDSs": "1712", "Average Protein Length": "286.2", "Coding Ratio (%)": "68.6", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_000982825.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.7968, "matched_fragments": 517, "total_fragments": 545, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=NBRC 102416", "accession": "GCA_000684935.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.768, "matched_fragments": 505, "total_fragments": 545, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=FDAARGOS_927", "accession": "GCA_016103025.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.7663, "matched_fragments": 515, "total_fragments": 545, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter sakazakii", "strain": "strain=ATCC 29544", "accession": "GCA_001971035.1", "taxid": 28141, "species_taxid": 28141, "relation_to_type": "type", "validated": true, "ani": 97.7047, "matched_fragments": 491, "total_fragments": 545, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_001277215.2", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.6596, "matched_fragments": 508, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cronobacter malonaticus", "strain": "strain=LMG 23826", "accession": "GCA_000409305.1", "taxid": 413503, "species_taxid": 413503, "relation_to_type": "type", "validated": true, "ani": 94.5739, "matched_fragments": 504, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5639, "matched_fragments": 351, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 80.4647, "matched_fragments": 340, "total_fragments": 545, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 80.4641, 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