{
    "type": "genome",
    "identifier": "GCA_014859965.1",
    "organism": "Phycisphaerae bacterium",
    "title": "Phycisphaerae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "Radboud University Nijmegen",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_014859965.1",
        "bioproject": "PRJNA663545",
        "biosample": "SAMN16148047",
        "wgs_master": "JACZKQ000000000.1",
        "refseq_category": "na",
        "taxid": "2026778",
        "species_taxid": "2026778",
        "organism_name": "Phycisphaerae bacterium",
        "infraspecific_name": "",
        "isolate": "MAG49",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/07",
        "asm_name": "ASM1485996v1",
        "submitter": "Radboud University Nijmegen",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/859/965/GCA_014859965.1_ASM1485996v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-07",
    "dateModified": "2020-10-07",
    "datePublished": "2020-10-07",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Phycisphaerae bacterium"
        ],
        "sample_taxid": [
            "2026778"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Sweden: Bothnian Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "1.510 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "5282053",
        "Number of Sequences": "199",
        "Longest Sequences (bp)": "245065",
        "N50 (bp)": "53190",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "58.8",
        "Number of CDSs": "3993",
        "Average Protein Length": "371.5",
        "Coding Ratio (%)": "84.3",
        "Number of rRNAs": "4",
        "Number of tRNAs": "46",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Paludisphaera borealis",
                "strain": "strain=PX4",
                "accession": "GCA_001956985.1",
                "taxid": 1387353,
                "species_taxid": 1387353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.3852,
                "matched_fragments": 50,
                "total_fragments": 1665,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aquisphaera giovannonii",
                "strain": "strain=OJF2",
                "accession": "GCA_008087625.1",
                "taxid": 406548,
                "species_taxid": 406548,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.332,
                "matched_fragments": 53,
                "total_fragments": 1665,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_014859965.1",
                "gtdb_species": "s__JACZKQ01 sp014859965",
                "ani": 100.0,
                "matched_fragments": 1655,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__JACZKQ01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003644175.1",
                "gtdb_species": "s__B28-G16 sp003644175",
                "ani": 76.7779,
                "matched_fragments": 109,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__B28-G16",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012729675.1",
                "gtdb_species": "s__T3Sed10-213 sp012729675",
                "ani": 76.6318,
                "matched_fragments": 81,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__T3Sed10-213",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011055475.1",
                "gtdb_species": "s__DSDH01 sp011055475",
                "ani": 76.5858,
                "matched_fragments": 130,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__DSDH01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018433925.1",
                "gtdb_species": "s__JAHDQI01 sp018433925",
                "ani": 76.5588,
                "matched_fragments": 67,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__JAHDQI01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011057845.1",
                "gtdb_species": "s__UBA2266 sp011057845",
                "ani": 76.4202,
                "matched_fragments": 87,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__UBA2266",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_011048645.1",
                "gtdb_species": "s__T3Sed10-213 sp011048645",
                "ani": 76.3604,
                "matched_fragments": 62,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__T3Sed10-213",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016930745.1",
                "gtdb_species": "s__JAFGGE01 sp016930745",
                "ani": 76.3162,
                "matched_fragments": 92,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__JAFGGE01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012517095.1",
                "gtdb_species": "s__FEN-1350 sp012517095",
                "ani": 76.0806,
                "matched_fragments": 69,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__Anaerohalosphaeraceae;g__FEN-1350",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012719085.1",
                "gtdb_species": "s__PLanc-01 sp012719085",
                "ani": 76.0609,
                "matched_fragments": 110,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012517265.1",
                "gtdb_species": "s__PLanc-01 sp012517265",
                "ani": 75.7649,
                "matched_fragments": 110,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016928975.1",
                "gtdb_species": "s__PLanc-01 sp016928975",
                "ani": 75.5747,
                "matched_fragments": 93,
                "total_fragments": 1665,
                "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Phycisphaerae;o__Sedimentisphaerales;f__SG8-4;g__PLanc-01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Phycisphaerae",
        "o__Sedimentisphaerales",
        "f__Anaerohalosphaeraceae",
        "g__JACZKQ01",
        "s__JACZKQ01 sp014859965"
    ],
    "_genome_taxon": [
        "Phycisphaerae",
        "bacterium",
        "d__Bacteria",
        "p__Planctomycetota",
        "c__Phycisphaerae",
        "o__Sedimentisphaerales",
        "f__Anaerohalosphaeraceae",
        "g__JACZKQ01",
        "s__JACZKQ01 sp014859965",
        "Bacteria",
        "Planctomycetota",
        "Phycisphaerae",
        "Sedimentisphaerales",
        "Anaerohalosphaeraceae",
        "JACZKQ01",
        "JACZKQ01",
        "sp014859965"
    ],
    "_meo": [
        {
            "id": "MEO_0000040",
            "label": "marine sediment"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}