{
    "type": "genome",
    "identifier": "GCA_014865765.1",
    "organism": "Acetatifactor sp.",
    "title": "Acetatifactor sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Queensland",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_014865765.1",
        "bioproject": "PRJNA562766",
        "biosample": "SAMN12905115",
        "wgs_master": "WGYL00000000.1",
        "refseq_category": "na",
        "taxid": "1872090",
        "species_taxid": "1872090",
        "organism_name": "Acetatifactor sp.",
        "infraspecific_name": "",
        "isolate": "COPD168",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/10/08",
        "asm_name": "ASM1486576v1",
        "submitter": "University of Queensland",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/865/765/GCA_014865765.1_ASM1486576v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-10-08",
    "dateModified": "2020-10-08",
    "datePublished": "2020-10-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acetatifactor sp."
        ],
        "sample_taxid": [
            "1872090"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Australia: Newcastle"
        ],
        "sample_host_location_id": [],
        "data_size": "0.790 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 72.92,
        "contamination": 0.46,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2771737",
        "Number of Sequences": "326",
        "Longest Sequences (bp)": "41879",
        "N50 (bp)": "12541",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.9",
        "Number of CDSs": "2310",
        "Average Protein Length": "327.5",
        "Coding Ratio (%)": "81.9",
        "Number of rRNAs": "0",
        "Number of tRNAs": "19",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Roseburia hominis",
                "strain": "strain=A2-183",
                "accession": "GCA_000225345.1",
                "taxid": 301301,
                "species_taxid": 301301,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7411,
                "matched_fragments": 62,
                "total_fragments": 758,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acetatifactor muris",
                "strain": "strain=DSM 23669",
                "accession": "GCA_024623325.1",
                "taxid": 879566,
                "species_taxid": 879566,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6427,
                "matched_fragments": 98,
                "total_fragments": 758,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella porci",
                "strain": "strain=WCA-389-WT-23B",
                "accession": "GCA_009696275.1",
                "taxid": 2652274,
                "species_taxid": 2652274,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0408,
                "matched_fragments": 79,
                "total_fragments": 758,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eisenbergiella massiliensis",
                "strain": "strain=AT11",
                "accession": "GCA_900243045.1",
                "taxid": 1720294,
                "species_taxid": 1720294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0261,
                "matched_fragments": 78,
                "total_fragments": 758,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 72.92,
            "contamination": 0.46,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_003584705.1",
                "gtdb_species": "s__Acetatifactor sp900066565",
                "ani": 98.1862,
                "matched_fragments": 693,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.01",
                "min_intra_species_ani": "97.56",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 26,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900772845.1",
                "gtdb_species": "s__Acetatifactor sp900772845",
                "ani": 89.4364,
                "matched_fragments": 586,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.92",
                "min_intra_species_ani": "95.92",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900771995.1",
                "gtdb_species": "s__Acetatifactor sp900771995",
                "ani": 88.6568,
                "matched_fragments": 570,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003447295.1",
                "gtdb_species": "s__Acetatifactor sp003447295",
                "ani": 88.2484,
                "matched_fragments": 437,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.04",
                "min_intra_species_ani": "96.84",
                "mean_intra_species_af": "0.74",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009695995.1",
                "gtdb_species": "s__Acetatifactor intestinalis",
                "ani": 88.0416,
                "matched_fragments": 560,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.98",
                "min_intra_species_ani": "96.46",
                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCA_002431915.1",
                "gtdb_species": "s__Acetatifactor sp002431915",
                "ani": 86.4601,
                "matched_fragments": 525,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900766575.1",
                "gtdb_species": "s__Acetatifactor sp900766575",
                "ani": 86.0504,
                "matched_fragments": 385,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015056975.1",
                "gtdb_species": "s__Acetatifactor sp015056975",
                "ani": 77.5572,
                "matched_fragments": 105,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016303085.1",
                "gtdb_species": "s__Acetatifactor sp016303085",
                "ani": 76.9668,
                "matched_fragments": 102,
                "total_fragments": 758,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Acetatifactor",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Acetatifactor",
        "s__Acetatifactor acetigignens"
    ],
    "_genome_taxon": [
        "Acetatifactor",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Acetatifactor",
        "s__Acetatifactor acetigignens",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Acetatifactor",
        "Acetatifactor",
        "acetigignens"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}