{ "type": "genome", "identifier": "GCA_015062925.1", "organism": "Methanobrevibacter thaueri", "title": "Methanobrevibacter thaueri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "University of California, Santa Barbara", "publication": [ {} ], "properties": { "assembly_accession": "GCA_015062925.1", "bioproject": "PRJNA530070", "biosample": "SAMN11294304", "wgs_master": "SUTL00000000.1", "refseq_category": "na", "taxid": "190975", "species_taxid": "190975", "organism_name": "Methanobrevibacter thaueri", "infraspecific_name": "", "isolate": "SIG19", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/10/28", "asm_name": "ASM1506292v1", "submitter": "University of California, Santa Barbara", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/062/925/GCA_015062925.1_ASM1506292v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-10-28", "dateModified": "2020-10-28", "datePublished": "2020-10-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Methanobrevibacter thaueri" ], "sample_taxid": [ "190975" ], "sample_host_organism": [ "San Clemente Island Goat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Santa Barbara Zoo" ], "sample_host_location_id": [], "data_size": "0.596 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2155220", "Number of Sequences": "153", 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"mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017434555.1", "gtdb_species": "s__Methanobrevibacter_A sp017434555", "ani": 78.7383, "matched_fragments": 221, "total_fragments": 648, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.09", "min_intra_species_ani": "97.80", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": -0.222, "doubling_h": 1.37, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 2244956.0, "gc_content": 30.616, "coding_genes": 1977.708, "rRNA16S_genes": 2.0, "tRNA_genes": 39.916, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 1.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_A", "s__Methanobrevibacter_A thaueri_C" ], "_genome_taxon": [ "Methanobrevibacter", "thaueri", "d__Archaea", "p__Methanobacteriota", "c__Methanobacteria", "o__Methanobacteriales", "f__Methanobacteriaceae", "g__Methanobrevibacter_A", "s__Methanobrevibacter_A thaueri_C", "Archaea", "Methanobacteriota", "Methanobacteria", "Methanobacteriales", "Methanobacteriaceae", "Methanobrevibacter", "A", "Methanobrevibacter", "A", "thaueri", "C" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }