{ "type": "genome", "identifier": "GCA_015262115.1", "organism": "Prevotella nigrescens", "title": "Prevotella nigrescens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "J. Craig Venter Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCA_015262115.1", "bioproject": "PRJNA624185", "biosample": "SAMN14570919", "wgs_master": "JABZTM000000000.1", "refseq_category": "na", "taxid": "28133", "species_taxid": "28133", "organism_name": "Prevotella nigrescens", "infraspecific_name": "", "isolate": "JCVI_32_bin.50", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/06", "asm_name": "ASM1526211v1", "submitter": "J. Craig Venter Institute", "gbrs_paired_asm": "GCF_015262115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/262/115/GCA_015262115.1_ASM1526211v1", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-06", "dateModified": "2020-11-06", "datePublished": "2020-11-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella nigrescens" ], "sample_taxid": [ "28133" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: UCLA School of Dentistry" ], "sample_host_location_id": [], "data_size": "0.811 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.88, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2813428", "Number of Sequences": "237", "Longest Sequences (bp)": "61205", "N50 (bp)": "17421", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.1", "Number of CDSs": "2201", "Average Protein Length": "338.9", "Coding Ratio (%)": "79.5", "Number of rRNAs": "0", "Number of tRNAs": "13", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 97.7025, "matched_fragments": 638, "total_fragments": 814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 97.6592, "matched_fragments": 642, "total_fragments": 814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 97.618, "matched_fragments": 645, "total_fragments": 814, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 86.2347, "matched_fragments": 492, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 86.226, "matched_fragments": 500, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella falsenii", "strain": "strain=JCM 15124", "accession": "GCA_000613945.1", "taxid": 515414, "species_taxid": 515414, "relation_to_type": "type", "validated": true, "ani": 84.1859, "matched_fragments": 496, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella illustrans", "strain": "strain=A2931", "accession": "GCA_017426725.1", "taxid": 2800387, "species_taxid": 2800387, "relation_to_type": "type", "validated": true, "ani": 82.7387, "matched_fragments": 77, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 82.6136, "matched_fragments": 524, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pallens", "strain": "strain=ATCC 700821", "accession": "GCA_000220255.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, "ani": 82.4987, "matched_fragments": 538, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 78.8878, "matched_fragments": 82, "total_fragments": 814, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.88, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000220235.1", "gtdb_species": "s__Prevotella nigrescens", "ani": 97.7025, "matched_fragments": 638, "total_fragments": 814, "gtdb_taxonomy": 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