{
    "type": "genome",
    "identifier": "GCA_015263045.1",
    "organism": "Porphyromonadaceae bacterium",
    "title": "Porphyromonadaceae bacterium",
    "description": "derived from metagenome; genus undefined",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_015263045.1",
        "bioproject": "PRJNA624185",
        "biosample": "SAMN14570874",
        "wgs_master": "JABZRT000000000.1",
        "refseq_category": "na",
        "taxid": "2049046",
        "species_taxid": "2049046",
        "organism_name": "Porphyromonadaceae bacterium",
        "infraspecific_name": "",
        "isolate": "JCVI_37_bin.10",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/06",
        "asm_name": "ASM1526304v1",
        "submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/263/045/GCA_015263045.1_ASM1526304v1",
        "excluded_from_refseq": "derived from metagenome; genus undefined",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-06",
    "dateModified": "2020-11-06",
    "datePublished": "2020-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Porphyromonadaceae bacterium"
        ],
        "sample_taxid": [
            "2049046"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: UCLA School of Dentistry"
        ],
        "sample_host_location_id": [],
        "data_size": "0.649 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2280067",
        "Number of Sequences": "81",
        "Longest Sequences (bp)": "137025",
        "N50 (bp)": "60770",
        "Gap Ratio (%)": "0.011272",
        "GCcontent (%)": "55.9",
        "Number of CDSs": "1711",
        "Average Protein Length": "365.5",
        "Coding Ratio (%)": "82.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Porphyromonas bobii",
                "strain": "strain=EMRHCC_6C",
                "accession": "GCA_943169685.1",
                "taxid": 2811780,
                "species_taxid": 2811780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.1707,
                "matched_fragments": 661,
                "total_fragments": 725,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Porphyromonas pasteri",
                "strain": "strain=JCM 30531",
                "accession": "GCA_014647755.1",
                "taxid": 1583331,
                "species_taxid": 1583331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.8493,
                "matched_fragments": 652,
                "total_fragments": 725,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Porphyromonas catoniae",
                "strain": "strain=ATCC 51270",
                "accession": "GCA_000565015.1",
                "taxid": 41976,
                "species_taxid": 41976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6868,
                "matched_fragments": 196,
                "total_fragments": 725,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014647755.1",
                "gtdb_species": "s__Porphyromonas pasteri",
                "ani": 95.8493,
                "matched_fragments": 652,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 32,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000467855.2",
                "gtdb_species": "s__Porphyromonas sp000467855",
                "ani": 80.7728,
                "matched_fragments": 440,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.77",
                "min_intra_species_ani": "96.77",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018127745.1",
                "gtdb_species": "s__Porphyromonas sp018127745",
                "ani": 79.5775,
                "matched_fragments": 337,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905372525.1",
                "gtdb_species": "s__Porphyromonas sp905372525",
                "ani": 79.0419,
                "matched_fragments": 282,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905372565.1",
                "gtdb_species": "s__Porphyromonas sp905372565",
                "ani": 78.7774,
                "matched_fragments": 266,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000565015.1",
                "gtdb_species": "s__Porphyromonas catoniae",
                "ani": 78.6868,
                "matched_fragments": 196,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000769075.1",
                "gtdb_species": "s__Porphyromonas sp000769075",
                "ani": 77.5064,
                "matched_fragments": 85,
                "total_fragments": 725,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.48",
                "min_intra_species_ani": "98.48",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.296,
        "cell_length": 0.109,
        "doubling_h": 0.809,
        "growth_tmp": 36.714,
        "optimum_tmp": 36.937,
        "optimum_ph": 7.462,
        "genome_size": 2637645.685,
        "gc_content": 46.475,
        "coding_genes": 2143.52,
        "rRNA16S_genes": 2.5,
        "tRNA_genes": 49.6,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.1,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas pasteri"
    ],
    "_genome_taxon": [
        "Porphyromonadaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas pasteri",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Porphyromonadaceae",
        "Porphyromonas",
        "Porphyromonas",
        "pasteri"
    ],
    "_meo": [
        {
            "id": "MEO_0000060",
            "label": "saliva"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}