{
    "type": "genome",
    "identifier": "GCA_015264975.1",
    "organism": "Streptococcus sp.",
    "title": "Streptococcus sp.",
    "description": "derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "J. Craig Venter Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_015264975.1",
        "bioproject": "PRJNA624185",
        "biosample": "SAMN14571059",
        "wgs_master": "JABZYW000000000.1",
        "refseq_category": "na",
        "taxid": "1306",
        "species_taxid": "1306",
        "organism_name": "Streptococcus sp.",
        "infraspecific_name": "",
        "isolate": "JCVI_38_bin.13",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/11/06",
        "asm_name": "ASM1526497v1",
        "submitter": "J. Craig Venter Institute",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/264/975/GCA_015264975.1_ASM1526497v1",
        "excluded_from_refseq": "derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-11-06",
    "dateModified": "2020-11-06",
    "datePublished": "2020-11-06",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptococcus sp."
        ],
        "sample_taxid": [
            "1306"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: UCLA School of Dentistry"
        ],
        "sample_host_location_id": [],
        "data_size": "0.427 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 82.58,
        "contamination": 15.03,
        "strain_heterogeneity": 21.43,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1481215",
        "Number of Sequences": "177",
        "Longest Sequences (bp)": "69854",
        "N50 (bp)": "14785",
        "Gap Ratio (%)": "0.004658",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "1312",
        "Average Protein Length": "296.3",
        "Coding Ratio (%)": "78.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "20",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=ATCC 49175",
                "accession": "GCA_025150565.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5722,
                "matched_fragments": 349,
                "total_fragments": 416,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=ATCC 49175",
                "accession": "GCA_000160675.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.5542,
                "matched_fragments": 346,
                "total_fragments": 416,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicatella adiacens",
                "strain": "strain=FDAARGOS_1477",
                "accession": "GCA_019931005.1",
                "taxid": 46124,
                "species_taxid": 46124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.4819,
                "matched_fragments": 352,
                "total_fragments": 416,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Granulicatella balaenopterae",
                "strain": "strain=DSM 15827",
                "accession": "GCA_900111135.1",
                "taxid": 137733,
                "species_taxid": 137733,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8187,
                "matched_fragments": 76,
                "total_fragments": 416,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 82.58,
            "contamination": 15.03,
            "strain_heterogeneity": 21.43
        },
        "gtdb_result": [
            {
                "accession": "GCA_001058355.1",
                "gtdb_species": "s__Granulicatella sp001058355",
                "ani": 95.6659,
                "matched_fragments": 293,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.40",
                "min_intra_species_ani": "95.27",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.71",
                "num_clustered_genomes": 6,
                "status": "inconclusive"
            },
            {
                "accession": "GCF_001071995.1",
                "gtdb_species": "s__Granulicatella sp001071995",
                "ani": 95.0755,
                "matched_fragments": 380,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "inconclusive"
            },
            {
                "accession": "GCA_018364485.1",
                "gtdb_species": "s__Granulicatella adiacens_A",
                "ani": 94.8278,
                "matched_fragments": 338,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015264885.1",
                "gtdb_species": "s__Granulicatella sp015264885",
                "ani": 94.596,
                "matched_fragments": 254,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.15",
                "min_intra_species_ani": "95.15",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900551535.1",
                "gtdb_species": "s__Granulicatella sp900551535",
                "ani": 94.5476,
                "matched_fragments": 289,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000160675.1",
                "gtdb_species": "s__Granulicatella adiacens",
                "ani": 88.5762,
                "matched_fragments": 345,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.49",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCA_905371865.1",
                "gtdb_species": "s__Granulicatella sp905371865",
                "ani": 87.8145,
                "matched_fragments": 234,
                "total_fragments": 416,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Granulicatella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.157,
        "cell_length": -0.167,
        "doubling_h": -0.216,
        "growth_tmp": 36.667,
        "optimum_tmp": 36.284,
        "optimum_ph": 6.89,
        "genome_size": 2093253.959,
        "gc_content": 39.262,
        "coding_genes": 1944.968,
        "rRNA16S_genes": 4.791,
        "tRNA_genes": 62.087,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.285,
        "facultative_respiration": 0.337,
        "anaerobic_respiration": 0.146,
        "aerobic_respiration": 0.516,
        "mesophilic_range_tmp": 0.969,
        "thermophilic_range_tmp": 0.03,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.943,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.056,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Aerococcaceae",
        "g__Granulicatella",
        "s__Granulicatella sp001058355"
    ],
    "_genome_taxon": [
        "Streptococcus",
        "sp.",
        "d__Bacteria",
        "p__Bacillota",
        "c__Bacilli",
        "o__Lactobacillales",
        "f__Aerococcaceae",
        "g__Granulicatella",
        "s__Granulicatella sp001058355",
        "Bacteria",
        "Bacillota",
        "Bacilli",
        "Lactobacillales",
        "Aerococcaceae",
        "Granulicatella",
        "Granulicatella",
        "sp001058355"
    ],
    "_meo": [
        {
            "id": "MEO_0000060",
            "label": "saliva"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}