{ "type": "genome", "identifier": "GCA_015489145.1", "organism": "Deltaproteobacteria bacterium", "title": "Deltaproteobacteria bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "Portland State University", "publication": [ {} ], "properties": { "assembly_accession": "GCA_015489145.1", "bioproject": "PRJNA546572", "biosample": "SAMN12876650", "wgs_master": "WGAH00000000.1", "refseq_category": "na", "taxid": "2026735", "species_taxid": "2026735", "organism_name": "Deltaproteobacteria bacterium", "infraspecific_name": "", "isolate": "S143_5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/11/16", "asm_name": "ASM1548914v1", "submitter": "Portland State University", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/489/145/GCA_015489145.1_ASM1548914v1", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-11-16", "dateModified": "2020-11-16", "datePublished": "2020-11-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Deltaproteobacteria bacterium" ], "sample_taxid": [ "2026735" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean" ], "sample_host_location_id": [], "data_size": "1.285 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4922690", "Number of Sequences": "965", "Longest Sequences (bp)": "25038", "N50 (bp)": "6080", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.9", "Number of CDSs": "3313", "Average Protein Length": "344.7", "Coding Ratio (%)": "69.6", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Anaeromyxobacter dehalogenans", "strain": "strain=2CP-1", "accession": "GCA_000022145.1", "taxid": 161493, "species_taxid": 161493, "relation_to_type": "type", "validated": true, "ani": 75.2869, "matched_fragments": 321, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haliangium ochraceum", "strain": "strain=DSM 14365", "accession": "GCA_000024805.1", "taxid": 80816, "species_taxid": 80816, "relation_to_type": "type", "validated": true, "ani": 75.252, "matched_fragments": 352, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metallibacterium scheffleri", "strain": "strain=DSM 24874", "accession": "GCA_004798955.1", "taxid": 993689, "species_taxid": 993689, "relation_to_type": "type", "validated": true, "ani": 75.222, "matched_fragments": 65, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella aurantiaca", "strain": "strain=DSM 17044", "accession": "GCA_900109545.1", "taxid": 41, "species_taxid": 41, "relation_to_type": "type", "validated": true, "ani": 75.1631, "matched_fragments": 181, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella hybrida", "strain": "strain=DSM 14722", "accession": "GCA_020103775.1", "taxid": 394097, "species_taxid": 394097, "relation_to_type": "type", "validated": true, "ani": 75.1468, "matched_fragments": 187, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corallococcus sicarius", "strain": "strain=CA040B", "accession": "GCA_003611735.1", "taxid": 2316726, "species_taxid": 2316726, "relation_to_type": "type", "validated": true, "ani": 75.142, "matched_fragments": 183, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas caseinilytica", "strain": "strain=G-1-1-14", "accession": "GCA_012927045.1", "taxid": 2728836, "species_taxid": 2728836, "relation_to_type": "type", "validated": true, "ani": 75.0744, "matched_fragments": 204, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubellimicrobium aerolatum", "strain": "strain=DSM 19297", "accession": "GCA_017872975.1", "taxid": 490979, "species_taxid": 490979, "relation_to_type": "type", "validated": true, "ani": 75.0648, "matched_fragments": 175, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus hippei", "strain": "strain=DSM 566", "accession": "GCA_003201595.1", "taxid": 744406, "species_taxid": 744406, "relation_to_type": "type", "validated": true, "ani": 75.0596, "matched_fragments": 175, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 75.0472, "matched_fragments": 210, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000202835.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 75.0445, "matched_fragments": 146, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stigmatella erecta", "strain": "strain=DSM 16858", "accession": "GCA_900111745.1", "taxid": 83460, "species_taxid": 83460, "relation_to_type": "type", "validated": true, "ani": 75.0427, "matched_fragments": 202, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=SM30", "accession": "GCA_011317485.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 75.0102, "matched_fragments": 249, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium multivorum", "strain": "strain=AIU301", "accession": "GCA_000964345.1", "taxid": 62140, "species_taxid": 62140, "relation_to_type": "type", "validated": true, "ani": 74.9993, "matched_fragments": 112, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Archangium gephyra", "strain": "strain=DSM 2261", "accession": "GCA_003387095.1", "taxid": 48, "species_taxid": 48, "relation_to_type": "type", "validated": true, "ani": 74.9885, "matched_fragments": 250, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_003258805.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 74.9815, "matched_fragments": 172, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 74.9779, "matched_fragments": 312, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Novosphingobium percolationis", "strain": "strain=c1", "accession": "GCA_020179425.1", "taxid": 2871811, "species_taxid": 2871811, "relation_to_type": "type", "validated": true, "ani": 74.977, "matched_fragments": 63, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nesterenkonia populi", "strain": "strain=DSM 27959", "accession": "GCA_007994735.1", "taxid": 1591087, "species_taxid": 1591087, "relation_to_type": "type", "validated": true, "ani": 74.9684, "matched_fragments": 60, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Variovorax soli", "strain": "strain=NBRC 106424", "accession": "GCA_001591385.1", "taxid": 376815, "species_taxid": 376815, "relation_to_type": "type", "validated": true, "ani": 74.9648, "matched_fragments": 127, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodoplanes elegans", "strain": "strain=DSM 11907", "accession": "GCA_016653355.1", "taxid": 29408, "species_taxid": 29408, "relation_to_type": "type", "validated": true, "ani": 74.9346, "matched_fragments": 208, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azohydromonas australica", "strain": "strain=DSM 1124", "accession": "GCA_000430725.1", "taxid": 364039, "species_taxid": 364039, "relation_to_type": "type", "validated": true, "ani": 74.9213, "matched_fragments": 223, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces dulcitolivorans", "strain": "strain=SJ-25", "accession": "GCA_003265355.1", "taxid": 2200759, "species_taxid": 2200759, "relation_to_type": "type", "validated": true, "ani": 74.8963, "matched_fragments": 245, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces albidus", "strain": "strain=NEAU-7082", "accession": "GCA_009451885.1", "taxid": 2656774, "species_taxid": 2656774, "relation_to_type": "type", "validated": true, "ani": 74.854, "matched_fragments": 281, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces sambucus", "strain": "strain=CGMCC 4.3147", "accession": "GCA_900102815.1", "taxid": 380244, "species_taxid": 380244, "relation_to_type": "type", "validated": true, "ani": 74.8471, "matched_fragments": 309, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 74.7906, "matched_fragments": 300, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=DSM 44983", "accession": "GCA_900090265.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 74.7897, "matched_fragments": 298, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora rifamycinica", "strain": "strain=AM105", "accession": "GCA_001542325.1", "taxid": 291594, "species_taxid": 291594, "relation_to_type": "type", "validated": true, "ani": 74.7723, "matched_fragments": 272, "total_fragments": 1124, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_015489145.1", "gtdb_species": "s__S143-5 sp015489145", "ani": 100.0, "matched_fragments": 1107, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__S143-5", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_003694325.1", "gtdb_species": "s__J125 sp003694325", "ani": 77.2164, "matched_fragments": 339, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__J125", "ani_circumscription_radius": 95.0, 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sp016792625", "ani": 76.236, "matched_fragments": 497, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__UBA2385;g__JAEUKK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_903921785.1", "gtdb_species": "s__SXON01 sp903921785", "ani": 75.8929, "matched_fragments": 360, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota_A;c__UBA796;o__UBA796;f__SXON01;g__SXON01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_003695625.1", "gtdb_species": "s__J065 sp003695625", "ani": 75.3748, "matched_fragments": 163, "total_fragments": 1124, "gtdb_taxonomy": 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"mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008039875.1", "gtdb_species": "s__Methylobacterium sp008039875", "ani": 75.0804, "matched_fragments": 209, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "97.89", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017994815.1", "gtdb_species": "s__JAGOJY01 sp017994815", "ani": 75.0792, "matched_fragments": 209, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Acidobacteriota;c__Mor1;o__J045;f__J045;g__JAGOJY01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003201595.1", "gtdb_species": "s__Sphaerotilus hippei", "ani": 75.0495, "matched_fragments": 179, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sphaerotilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000202835.1", "gtdb_species": "s__Acidiphilium multivorum", "ani": 75.0374, "matched_fragments": 148, "total_fragments": 1124, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acidiphilium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.42", "mean_intra_species_af": 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